Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 2.1e-178 629.0 338 100.0
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-72 277.3 334 49.4
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.2e-70 269.6 337 53.7
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.2e-70 269.2 339 48.7
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 5.5e-70 268.9 337 53.7
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 2.6e-64 250.0 338 52.1
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 7.6e-64 248.4 335 50.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.1e-62 244.6 315 53.7
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 2.5e-62 243.4 337 48.7
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 7.9e-61 238.4 336 47.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.5e-59 234.2 344 49.7
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 9.7e-59 231.5 333 44.4
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 4.5e-56 222.6 332 42.8
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.2e-55 220.3 341 50.4
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 6.5e-55 218.8 336 43.2
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.5e-55 218.4 336 50.0
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.3e-54 214.9 343 45.8
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 9.3e-54 214.9 342 46.2
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.6e-53 212.6 343 44.6
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 3.3e-51 206.5 326 43.6
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.2e-50 203.8 337 45.4
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 8.2e-50 201.8 339 42.8
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 1.2e-48 198.0 338 40.8
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.2e-48 198.0 340 42.6
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.4e-48 196.4 334 37.4
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.3e-47 194.5 337 38.3
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.2e-47 193.7 307 43.6
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.5e-47 192.2 307 41.4
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 8.5e-47 191.8 338 46.2
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.4e-46 191.0 360 43.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 3.2e-46 189.9 338 42.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 4.2e-46 189.5 338 40.5
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 4.2e-46 189.5 317 38.8
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.5e-46 189.1 338 42.6
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-45 188.0 338 42.6
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.1e-45 187.2 335 41.8
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.7e-45 186.8 317 38.8
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 3.6e-45 186.4 339 42.2
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.6e-45 186.4 339 35.7
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.6e-45 186.0 338 42.9
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 6.1e-45 185.7 337 38.0
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.1e-45 185.7 335 37.3
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.0e-44 184.9 335 37.0
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 1.8e-44 184.1 341 43.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.3e-44 183.7 346 38.2
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 2.3e-44 183.7 340 43.8
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 3.0e-44 183.3 304 41.1
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.9e-44 183.0 319 40.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.0e-43 180.6 336 43.8
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.6e-43 180.3 337 42.7
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 3.3e-43 179.9 340 40.3
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 4.4e-43 179.5 344 41.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.7e-42 177.6 336 40.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.8e-42 176.0 338 39.6
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.3e-39 167.9 337 39.2
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.9e-39 166.8 346 39.0
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.1e-38 164.9 349 39.8
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 4.2e-38 162.9 337 42.4
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.2e-37 161.4 307 44.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 8.0e-37 158.7 344 39.2
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 8.0e-37 158.7 340 38.2
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.0e-36 158.3 310 44.2
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 2.3e-36 157.1 336 41.7
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.0e-36 156.8 337 34.7
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 3.0e-36 156.8 335 33.7
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.0e-36 156.8 332 33.1
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.2e-36 156.0 338 34.9
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 6.7e-36 155.6 332 35.2
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.3e-34 151.4 353 34.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.7e-34 151.0 336 34.8
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 4.8e-34 149.4 319 39.2
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.1e-33 148.3 338 40.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 7.0e-33 145.6 336 40.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.6e-32 144.4 281 38.8
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.6e-32 143.7 343 41.1
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 5.9e-32 142.5 337 32.3
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 7.7e-32 142.1 343 40.2
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 2.9e-31 140.2 344 38.7
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.9e-31 140.2 288 35.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 3.8e-31 139.8 342 36.8
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 5.0e-31 139.4 336 35.7
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.0e-31 139.4 333 32.4
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 8.5e-31 138.7 341 39.3
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.5e-30 137.1 341 35.8
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.2e-30 136.7 344 33.4
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.2e-30 136.3 335 39.4
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.2e-30 136.3 335 39.4
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 7.2e-30 135.6 335 39.1
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 7.2e-30 135.6 335 39.1
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 9.4e-30 135.2 344 39.0
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 9.4e-30 135.2 338 38.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-29 134.8 345 39.1
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 1.2e-29 134.8 341 39.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 3.6e-29 133.3 345 39.7
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 8.0e-29 132.1 344 39.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.0e-28 131.7 334 36.5
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.0e-28 130.2 338 37.0
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.0e-28 130.2 337 34.1
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.0e-28 130.2 335 39.4
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 3.0e-28 130.2 343 39.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.0e-28 130.2 334 37.7
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.5e-27 127.9 341 33.1
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 4.4e-27 126.3 345 38.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.4e-27 126.3 337 35.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 9.7e-27 125.2 343 37.0
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 8.2e-26 122.1 332 33.7
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 8.2e-26 122.1 328 38.1
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 2.4e-25 120.6 208 37.5
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.2e-24 118.2 331 32.3
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.6e-24 117.9 327 31.5
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.0e-24 117.5 327 33.6
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.5e-24 116.3 332 29.5
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.9e-24 115.9 334 31.1
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 5.9e-24 115.9 323 32.5
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.9e-24 115.9 332 29.5
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.0e-23 115.2 279 38.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.3e-23 114.8 310 30.6
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.5e-22 111.3 323 31.0
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 3.2e-22 110.2 327 29.4
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 4.2e-22 109.8 327 30.9
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 4.2e-22 109.8 333 37.8
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.2e-21 108.2 332 35.8
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 2.3e-20 104.0 213 37.1
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 6.8e-20 102.4 328 32.9
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 3.4e-19 100.1 327 30.3
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 4.4e-19 99.8 322 37.0
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 7.5e-19 99.0 329 31.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 9.8e-19 98.6 332 36.1
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.7e-18 96.7 322 34.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 6.3e-18 95.9 325 29.5
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.4e-17 94.7 205 31.7
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 9.1e-17 92.0 326 30.1
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 9.1e-17 92.0 326 30.1
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-16 91.7 326 30.1
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.2e-16 91.7 149 38.9
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 5.9e-16 89.4 327 32.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.3e-15 87.4 207 31.9
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 2.9e-15 87.0 309 27.8
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.9e-14 84.3 291 31.3
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.9e-14 84.3 155 36.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 4.2e-14 83.2 285 36.5
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.6e-13 80.1 327 25.4
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 4.0e-12 76.6 257 35.4
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.5e-11 74.7 196 34.2
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 1.5e-11 74.7 271 34.7
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.0e-11 74.3 321 29.9
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 2.8e-10 70.5 323 31.9
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.8e-10 70.5 283 32.2
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 4.9e-10 69.7 216 32.4
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 1.2e-08 65.1 145 32.4
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.3e-07 61.6 126 38.1
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.3e-06 56.6 261 29.1
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 9.5e-06 55.5 175 33.7


User provided reference genes

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