Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 0.0e+00 1104.7 534 100.0
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.1e-209 731.1 527 65.7
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.8e-208 729.6 527 65.7
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 9.8e-207 723.8 526 65.6
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 4.0e-200 701.8 528 61.7
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 1.5e-199 699.9 525 65.1
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 9.2e-197 690.6 525 62.3
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.2e-196 690.3 517 63.2
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 6.0e-196 688.0 517 63.2
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.7e-195 686.4 518 62.4
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 3.0e-195 685.6 519 64.7
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 1.1e-194 683.7 527 63.8
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 5.6e-194 681.4 498 64.9
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 3.6e-193 678.7 532 60.7
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.4e-192 676.8 532 60.9
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 4.0e-192 675.2 477 67.5
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 6.8e-192 674.5 528 61.4
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 3.4e-191 672.2 546 60.6
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 5.8e-191 671.4 522 61.1
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 2.2e-190 669.5 521 60.8
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.9e-190 669.1 515 62.5
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 6.4e-190 667.9 581 59.4
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 1.1e-189 667.2 527 62.2
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.1e-189 667.2 581 58.7
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.1e-189 665.2 478 65.7
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 3.5e-188 662.1 473 65.8
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 3.5e-188 662.1 481 66.1
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 4.6e-188 661.8 530 60.4
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.3e-187 660.2 478 64.4
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.9e-186 656.4 538 60.0
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 9.5e-186 654.1 599 56.3
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 4.0e-184 648.7 526 59.5
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 6.8e-184 647.9 493 61.9
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 6.8e-184 647.9 466 68.0
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 2.6e-183 646.0 530 58.5
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 3.4e-183 645.6 469 65.5
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 5.8e-183 644.8 478 64.0
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 5.8e-183 644.8 481 65.1
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 2.2e-182 642.9 530 59.4
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 4.9e-182 641.7 485 62.9
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 9.2e-181 637.5 522 58.2
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 6.0e-180 634.8 477 61.8
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 7.8e-180 634.4 468 65.2
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.0e-179 634.0 530 57.9
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 3.9e-179 632.1 524 59.0
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 8.6e-179 630.9 559 57.4
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 3.3e-178 629.0 491 60.1
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 2.8e-177 625.9 477 61.0
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 6.2e-177 624.8 477 62.3
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 1.8e-176 623.2 522 58.2
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.5e-175 620.2 481 61.5
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 8.4e-174 614.4 467 63.0
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 8.4e-174 614.4 534 56.4
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.1e-173 614.0 477 61.8
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.4e-173 613.6 481 60.1
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.9e-173 613.2 514 58.8
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 7.1e-173 611.3 477 63.3
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.2e-172 610.5 491 60.3
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 7.8e-172 607.8 468 63.0
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 5.1e-171 605.1 530 57.0
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 6.6e-171 604.7 427 67.4
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 4.3e-170 602.1 478 59.6
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 7.3e-170 601.3 477 60.6
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 9.6e-170 600.9 531 56.9
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.1e-169 599.7 477 60.4
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.8e-169 599.4 496 59.3
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.8e-169 599.4 496 59.3
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 6.2e-169 598.2 481 58.4
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 1.4e-165 587.0 482 57.9
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.9e-165 586.6 471 58.8
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.9e-157 560.1 470 58.7
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.6e-156 555.4 641 46.8
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 1.0e-155 554.3 526 53.4
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 2.3e-155 553.1 490 55.9
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.3e-153 547.4 470 57.0
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 8.1e-153 544.7 488 57.0
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 8.1e-153 544.7 520 53.5
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 1.4e-152 543.9 481 55.7
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.4e-152 543.1 496 54.8
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.6e-151 539.7 498 54.2
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 7.6e-151 538.1 490 54.7
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 9.9e-151 537.7 498 54.0
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.3e-150 537.3 491 54.8
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 3.8e-150 535.8 498 54.2
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 3.8e-150 535.8 498 54.2
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 2.1e-148 530.0 543 49.4
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 2.7e-148 529.6 522 51.1
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.3e-147 527.3 519 51.1
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 3.0e-147 526.2 479 55.3
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.1e-146 524.2 539 49.4
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.4e-136 490.7 343 66.8
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 7.4e-130 468.4 360 64.4
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 9.1e-128 461.5 440 53.0
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 9.1e-128 461.5 466 51.7
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 2.0e-122 443.7 332 63.6
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.2e-110 403.7 548 40.0
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.1e-104 384.8 309 61.5
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 2.6e-98 363.6 496 39.1
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.4e-98 363.2 303 58.7
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.3e-97 361.3 491 41.5
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.1e-96 358.2 359 51.8
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.0e-90 337.4 277 59.6
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 2.0e-90 337.4 277 59.6
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.5e-85 320.5 526 36.3
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 3.3e-85 320.1 266 58.6
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.4e-80 304.7 295 49.8
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 5.6e-77 292.7 219 61.6
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.4e-72 278.1 214 61.7
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 6.2e-68 262.7 248 53.2
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 4.6e-55 219.9 356 37.1
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 1.6e-52 211.5 204 52.9
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.4e-43 181.8 354 35.3
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.1e-37 162.2 85 83.5
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 4.3e-37 160.2 177 46.9
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.0e-30 139.0 76 77.6
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 3.5e-23 114.0 90 60.0
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.1e-19 102.4 140 40.7
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 5.3e-19 100.1 75 65.3
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 6.9e-19 99.8 114 45.6
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 2.9e-17 94.4 100 48.0
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.7e-15 87.8 53 75.5
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-14 85.5 53 75.5
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 3.0e-14 84.3 43 86.0
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.5e-13 81.3 53 75.5
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.3e-13 80.9 53 71.7
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.3e-13 80.9 53 71.7
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 7.4e-13 79.7 148 29.1
Cfa022097 Carpinus fangiana HOM05D020990 ORTHO05D028642 6.3e-12 76.6 201 26.9
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 8.2e-12 76.3 76 44.7
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 2.9e-09 67.8 268 25.0
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 3.2e-08 64.3 138 29.7
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 7.9e-07 59.7 59 54.2


User provided reference genes

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