Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 3.7e-216 754.6 384 100.0
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 6.4e-176 620.9 384 78.9
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 9.3e-175 617.1 386 79.8
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 9.3e-175 617.1 386 80.1
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 4.6e-174 614.8 383 77.0
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 6.0e-174 614.4 386 79.0
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.3e-173 613.2 383 77.5
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.3e-173 612.5 386 78.5
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.9e-173 611.7 386 78.8
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 3.3e-172 608.6 383 76.8
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 3.3e-172 608.6 383 76.8
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 9.6e-172 607.1 386 77.7
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.4e-170 603.2 383 77.0
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 1.4e-170 603.2 385 77.4
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 1.4e-170 603.2 385 77.4
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 2.6e-169 599.0 380 80.0
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 9.9e-169 597.0 386 76.9
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 2.2e-168 595.9 391 76.2
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.8e-168 595.1 386 78.0
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.4e-167 593.2 381 76.4
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 4.2e-167 591.7 392 76.8
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 7.1e-167 590.9 383 76.2
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.2e-166 590.1 393 77.1
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 2.1e-166 589.3 386 75.1
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 2.7e-166 589.0 383 76.0
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 3.5e-166 588.6 384 75.8
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 3.5e-166 588.6 402 73.1
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 6.0e-166 587.8 381 76.1
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.0e-165 587.0 385 76.1
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 3.9e-165 585.1 382 76.2
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 6.7e-165 584.3 386 75.1
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 1.1e-164 583.6 386 74.9
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.1e-164 583.6 388 74.7
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.5e-164 583.2 382 75.9
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 1.5e-164 583.2 384 74.7
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 1.9e-164 582.8 376 75.8
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 5.6e-164 581.3 384 73.2
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.3e-163 580.1 384 75.3
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 1.6e-163 579.7 384 75.8
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 2.1e-163 579.3 385 75.8
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 2.1e-163 579.3 386 75.6
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 3.7e-163 578.6 383 75.7
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 1.4e-162 576.6 384 73.2
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.4e-162 576.6 385 73.8
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 3.1e-162 575.5 383 74.7
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 4.0e-162 575.1 379 75.2
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 6.9e-162 574.3 384 73.4
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 9.0e-162 573.9 382 74.6
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.2e-161 573.5 382 74.6
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 1.2e-161 573.5 384 74.5
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 2.0e-161 572.8 376 76.1
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 7.6e-161 570.9 380 74.5
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 2.2e-160 569.3 379 74.1
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 6.5e-160 567.8 384 73.2
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 7.1e-159 564.3 388 72.4
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 1.2e-158 563.5 385 72.7
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 4.6e-158 561.6 384 72.1
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.8e-157 559.7 386 71.8
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.8e-157 559.7 386 71.5
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 2.3e-157 559.3 386 71.8
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 3.0e-157 558.9 385 74.3
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 3.9e-157 558.5 387 72.4
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 9.6e-156 553.9 383 71.5
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 3.7e-155 552.0 376 72.3
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 4.8e-155 551.6 383 71.0
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 6.3e-155 551.2 383 74.9
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 8.2e-155 550.8 518 58.7
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.7e-152 543.1 384 69.5
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 8.4e-152 540.8 380 68.2
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 2.5e-151 539.3 381 71.4
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 5.5e-151 538.1 379 69.1
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 1.2e-150 537.0 382 70.4
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 4.6e-150 535.0 385 68.3
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.0e-149 533.9 380 68.9
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.0e-149 533.9 380 68.9
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.3e-149 533.5 384 69.0
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.3e-149 533.5 428 65.9
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 5.1e-149 531.6 383 67.9
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 8.7e-149 530.8 384 69.3
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 8.7e-149 530.8 383 70.5
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 4.8e-147 525.0 378 70.4
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 1.1e-146 523.9 385 66.8
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.4e-146 523.5 356 72.5
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 1.2e-145 520.4 383 67.1
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 2.6e-145 519.2 390 66.2
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 1.3e-144 516.9 384 68.2
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 2.9e-144 515.8 347 73.8
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.6e-142 510.0 385 65.5
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 2.7e-142 509.2 380 66.6
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.1e-140 503.8 310 79.4
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 1.3e-139 500.4 384 65.4
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 4.1e-138 495.4 384 62.8
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 6.9e-138 494.6 351 71.2
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 3.4e-137 492.3 386 65.8
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.2e-136 489.6 385 63.4
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 8.5e-136 487.6 382 64.1
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 2.5e-135 486.1 308 80.5
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 7.0e-130 468.0 332 73.5
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.5e-127 460.3 381 64.3
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 2.7e-126 456.1 314 74.8
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 4.7e-126 455.3 290 76.2
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 9.7e-124 447.6 290 74.8
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 8.5e-120 434.5 306 70.3
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.8e-117 424.9 374 56.4
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 6.5e-112 408.3 381 55.1
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 5.2e-109 398.7 262 72.9
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 3.7e-107 392.5 381 52.8
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.4e-106 389.8 232 78.9
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 4.1e-106 389.0 381 54.1
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 7.0e-106 388.3 404 51.2
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.3e-99 367.5 229 76.4
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 6.4e-99 365.2 266 67.7
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 3.3e-95 352.8 232 77.2
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 2.9e-91 339.7 267 66.3
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 1.9e-66 257.3 238 59.2
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-63 248.1 148 77.7
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 2.0e-60 237.3 153 80.4
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 1.1e-55 221.5 393 34.9
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.5e-55 221.1 426 36.9
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 3.6e-54 216.5 423 35.2
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 6.0e-49 199.1 151 65.6
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 2.2e-43 180.6 115 80.9
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 8.2e-38 162.2 107 66.4
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 3.4e-28 130.2 183 41.0
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 2.6e-23 114.0 144 50.0
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.2e-22 110.9 154 41.6
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 3.7e-22 110.2 66 77.3
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.2e-20 105.1 148 41.2
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 1.9e-18 97.8 101 55.4
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.8e-16 91.3 68 72.1
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 4.1e-13 80.1 111 41.4
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 7.0e-13 79.3 70 50.0
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-12 77.8 72 52.8
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 5.0e-11 73.2 36 94.4
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 6.1e-09 66.2 36 86.1
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.6e-07 60.8 86 38.4


User provided reference genes

Program Settings