Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1737.2 835 100.0
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1346.3 835 75.9
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1338.6 824 75.8
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1333.5 833 76.0
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1332.4 835 75.0
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1331.6 834 75.1
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1328.5 828 75.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1322.0 828 73.6
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1320.4 825 76.0
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1318.9 830 74.1
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1313.9 824 74.9
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1298.1 836 73.6
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1297.0 839 72.7
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1293.9 835 73.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1292.3 826 74.1
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1291.9 829 74.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1290.4 830 72.8
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1290.0 825 74.9
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1286.9 830 72.5
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1280.4 829 72.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1276.5 834 72.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1275.4 829 73.2
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1273.5 823 72.8
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1270.8 838 72.4
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1269.6 824 71.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1267.7 834 71.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1265.8 830 72.0
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1263.4 833 72.7
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1262.7 830 71.8
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1262.3 831 71.5
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1259.2 834 71.8
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 830 72.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1255.4 828 71.1
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1255.4 832 71.2
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1255.0 835 72.0
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 839 70.9
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1253.4 841 71.0
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1252.7 832 71.8
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1252.3 835 70.3
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1251.1 832 71.6
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1250.7 826 71.8
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1250.7 830 71.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1250.3 835 71.6
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1249.6 838 71.2
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1248.8 832 71.5
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1246.1 839 71.3
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1245.3 838 71.1
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1244.6 839 70.7
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1243.8 964 64.0
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1242.3 832 71.5
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1241.9 838 71.1
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1241.5 832 71.2
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1237.2 830 71.1
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1236.5 835 71.0
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1236.1 833 70.7
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1234.6 831 70.0
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1234.2 830 70.5
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1232.2 833 70.5
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1229.2 834 69.9
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1228.0 831 69.8
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1228.0 830 68.9
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1226.1 830 71.1
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 834 69.5
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1224.5 833 69.9
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1223.4 841 69.8
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1218.0 852 68.1
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1217.2 836 69.9
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1208.0 782 74.0
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1201.0 873 67.0
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1187.6 934 63.5
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1182.9 846 68.2
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1181.8 824 69.1
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1170.2 853 67.2
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1167.1 835 68.1
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1162.9 833 66.5
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1157.1 835 64.7
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1156.4 832 64.9
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1155.6 837 65.2
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1155.2 730 75.2
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1154.4 835 65.1
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1153.7 834 65.2
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1151.0 835 64.6
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1150.6 828 65.3
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1149.0 828 65.3
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 830 65.2
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1147.1 829 64.9
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1144.8 831 65.2
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1138.6 830 64.8
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1137.5 837 64.8
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1137.5 832 64.9
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 832 63.9
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1131.7 756 71.6
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1123.2 833 63.5
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1115.5 839 62.2
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1111.7 838 62.8
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1079.3 827 62.5
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.4e-292 1008.8 667 72.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.7e-290 1002.7 836 59.0
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 9.4e-273 943.7 640 70.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.9e-266 922.2 566 75.6
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 8.5e-266 920.6 830 56.4
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.0e-255 887.1 895 50.1
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.0e-239 833.9 850 48.8
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 3.1e-239 832.4 854 51.2
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.7e-221 773.5 823 49.0
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 4.1e-175 619.4 462 65.2
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.7e-165 587.4 397 68.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 4.0e-146 523.1 402 63.4
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.1e-135 486.9 362 62.7
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.8e-131 473.8 354 62.7
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.7e-120 438.0 263 77.6
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.0e-101 375.6 818 34.5
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.6e-99 368.2 227 74.9
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 3.1e-98 364.0 484 44.6
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 5.3e-98 363.2 863 30.6
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.6e-97 360.9 306 56.5
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.7e-96 358.2 1177 26.1
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.4e-96 356.3 265 64.2
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 1.0e-93 349.0 307 60.3
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.1e-91 341.3 195 79.0
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.2e-88 331.3 193 79.8
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.8e-83 314.3 194 75.3
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.0e-82 310.5 798 29.8
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.5e-79 301.2 238 65.1
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 9.4e-63 246.1 561 31.0
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 5.5e-47 193.7 196 48.0
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 5.2e-45 187.2 563 26.8
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 5.2e-45 187.2 563 26.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-44 186.0 154 61.0
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.2e-39 167.9 99 74.7
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.7e-38 164.9 102 71.6
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 2.7e-38 164.9 110 69.1
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.7e-30 138.3 78 78.2
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 2.0e-28 132.1 96 63.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.3e-27 129.4 76 77.6
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.4e-26 125.2 211 37.0
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.1e-23 116.3 69 75.4
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 5.2e-21 107.5 65 67.7
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 6.8e-21 107.1 60 80.0
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 3.7e-19 101.3 108 50.0
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.1e-18 97.8 64 70.3
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 9.2e-18 96.7 77 55.8
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 9.2e-18 96.7 131 38.9
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.0e-16 93.2 107 46.7
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 8.6e-16 90.1 100 46.0
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.3e-15 88.2 52 75.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 5.6e-15 87.4 105 41.0
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.4e-10 72.8 104 37.5
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 3.0e-08 65.1 84 44.0
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 5.6e-07 60.8 133 25.6
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 4.7e-06 57.8 148 27.7
COL.COLO4_29887 Corchorus olitorius HOM05D001610 ORTHO05D001585 8.0e-06 57.0 184 27.7


User provided reference genes

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