Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 2.1e-146 523.9 265 100.0
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 2.6e-64 251.1 257 52.1
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 1.7e-63 248.4 257 51.4
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 5.5e-62 243.4 242 52.1
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 5.1e-60 236.9 232 54.3
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.1e-59 235.7 252 50.0
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 1.9e-59 235.0 250 50.4
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 1.9e-59 235.0 188 59.0
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.8e-57 228.4 263 47.1
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.4e-57 228.0 258 48.4
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 1.0e-55 222.6 253 49.8
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 1.1e-54 219.2 187 56.7
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 1.4e-54 218.8 248 45.6
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.0e-52 212.6 244 48.4
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 7.4e-51 206.5 247 44.5
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 9.7e-51 206.1 249 45.8
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 1.3e-50 205.7 247 43.7
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 3.1e-49 201.1 185 50.8
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 7.0e-49 199.9 178 56.2
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 9.1e-49 199.5 251 44.2
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 1.2e-48 199.1 255 46.3
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 5.0e-47 193.7 179 50.3
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 5.5e-46 190.3 184 49.5
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 5.5e-46 190.3 184 49.5
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 7.2e-46 189.9 254 42.9
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 9.4e-46 189.5 246 41.1
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 2.1e-45 188.3 245 42.4
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 3.6e-45 187.6 235 44.7
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 6.1e-45 186.8 202 45.0
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 6.1e-45 186.8 231 45.9
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.0e-44 186.0 178 48.9
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 5.2e-44 183.7 176 53.4
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 1.1e-43 182.6 168 54.2
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 2.0e-43 181.8 190 47.4
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 2.0e-43 181.8 233 43.8
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 5.7e-43 180.3 157 55.4
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 1.4e-41 175.6 189 47.6
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 5.3e-41 173.7 184 44.6
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 5.3e-41 173.7 234 44.9
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 2.6e-40 171.4 225 44.4
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 5.9e-40 170.2 238 40.8
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 7.7e-40 169.9 175 49.7
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 1.3e-39 169.1 180 47.2
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 5.0e-39 167.2 225 42.2
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 6.5e-39 166.8 250 38.8
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 8.5e-39 166.4 149 55.0
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 9.4e-38 162.9 221 43.4
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 9.4e-38 162.9 149 53.0
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 2.1e-37 161.8 158 53.2
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 8.0e-37 159.8 167 47.3
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 3.0e-36 157.9 181 44.8
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.0e-36 157.5 187 42.8
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 6.7e-36 156.8 171 45.0
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 1.2e-35 156.0 153 52.9
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.2e-35 156.0 148 50.0
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 2.0e-35 155.2 147 51.7
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 2.6e-35 154.8 136 54.4
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 3.3e-35 154.5 266 38.3
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 6.3e-34 150.2 148 50.7
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 2.4e-33 148.3 158 48.1
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 3.1e-33 147.9 149 51.7
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 4.1e-33 147.5 149 52.3
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 7.0e-33 146.7 145 50.3
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 9.1e-33 146.4 148 51.4
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 1.6e-32 145.6 180 42.8
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 2.7e-32 144.8 140 54.3
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 5.9e-32 143.7 162 47.5
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 4.2e-30 137.5 216 35.6
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 3.6e-29 134.4 98 64.3
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 6.1e-29 133.7 179 40.2
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 1.8e-28 132.1 199 40.2
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 3.4e-27 127.9 131 46.6
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 7.5e-27 126.7 147 42.9
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 9.8e-27 126.3 149 41.6
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 1.3e-26 125.9 132 46.2
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 1.7e-26 125.6 147 41.5
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 1.7e-26 125.6 147 41.5
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 1.8e-25 122.1 165 39.4
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 4.1e-25 120.9 176 39.2
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 2.3e-23 115.2 129 44.2
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 2.9e-23 114.8 160 38.1
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 3.8e-23 114.4 75 69.3
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 6.6e-23 113.6 160 38.8
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 3.3e-22 111.3 130 42.3
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 5.5e-22 110.5 156 42.9
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 8.0e-21 106.7 106 49.1
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 2.8e-18 98.2 174 36.8
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.9e-18 97.4 96 53.1
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 3.8e-15 87.8 78 53.8
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 1.4e-12 79.3 95 46.3
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 6.8e-12 77.0 85 45.9
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 7.5e-11 73.6 166 28.3
TPR.G9703 Trifolium pratense HOM05D007426 ORTHO05D009167 6.0e-08 63.9 44 63.6
Peaxi162Scf00205g01111 Petunia axillaris HOM05D007426 ORTHO05D009167 1.7e-07 62.4 39 71.8
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 1.7e-07 62.4 138 34.8
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 3.9e-07 61.2 139 33.8
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 5.6e-06 57.4 130 34.6
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 9.5e-06 56.6 150 29.3


User provided reference genes

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