Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 6.3e-241 837.0 422 100.0
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 5.2e-195 684.5 418 79.4
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 8.9e-195 683.7 418 79.4
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 5.6e-189 664.5 416 76.9
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.1e-187 660.2 408 79.4
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 7.5e-186 654.1 415 75.9
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 3.7e-185 651.7 415 75.9
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 1.4e-184 649.8 415 75.7
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 7.8e-183 644.0 424 75.0
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 2.3e-182 642.5 418 76.8
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 2.5e-181 639.0 408 77.0
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 4.0e-179 631.7 413 75.3
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 1.2e-178 630.2 418 76.1
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 1.2e-178 630.2 419 76.1
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 2.6e-178 629.0 415 74.5
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 3.4e-178 628.6 417 74.6
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 5.8e-178 627.9 418 73.9
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 3.7e-177 625.2 418 73.0
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 6.4e-177 624.4 420 74.3
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 3.2e-176 622.1 426 71.6
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 1.2e-175 620.2 418 72.5
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 1.2e-175 620.2 462 69.3
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.7e-175 619.0 418 72.2
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 4.6e-175 618.2 440 71.8
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.8e-175 617.5 418 72.2
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 1.3e-174 616.7 414 73.9
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 8.6e-174 614.0 425 71.8
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 2.8e-172 609.0 415 72.3
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 6.2e-172 607.8 408 74.0
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 1.8e-171 606.3 414 72.7
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.8e-171 606.3 414 74.6
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 5.2e-171 604.7 418 71.8
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 5.8e-170 601.3 418 72.2
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 9.9e-170 600.5 410 72.0
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 3.8e-169 598.6 418 69.9
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 3.2e-168 595.5 421 71.0
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 2.1e-167 592.8 414 71.0
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 2.7e-167 592.4 406 72.7
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 2.7e-167 592.4 410 70.5
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 2.7e-167 592.4 406 73.6
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 3.5e-167 592.0 414 70.8
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 4.6e-167 591.7 411 71.5
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 4.6e-167 591.7 461 65.7
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 7.8e-167 590.9 455 67.0
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 1.0e-166 590.5 412 71.6
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 3.0e-166 589.0 418 70.1
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 3.0e-166 589.0 415 70.6
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.1e-166 588.2 463 65.0
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 1.1e-165 587.0 406 72.7
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 2.5e-165 585.9 415 71.8
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 2.1e-164 582.8 414 69.8
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 4.7e-164 581.6 415 68.7
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 6.2e-164 581.3 413 70.7
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.1e-163 580.5 487 62.8
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 5.2e-163 578.2 405 70.9
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 2.6e-162 575.9 416 67.3
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 9.9e-162 573.9 402 70.6
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 4.9e-161 571.6 413 67.1
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.1e-160 570.5 416 66.8
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.1e-160 570.5 416 66.6
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 1.9e-160 569.7 416 67.8
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 2.4e-160 569.3 416 66.6
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 3.2e-160 568.9 410 69.5
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 5.4e-160 568.2 416 67.8
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 2.7e-159 565.8 422 65.9
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 1.3e-158 563.5 418 68.9
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 6.6e-158 561.2 416 64.7
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 9.6e-157 557.4 418 68.2
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 9.6e-157 557.4 418 67.9
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 4.5e-154 548.5 445 61.8
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.8e-154 548.1 448 63.6
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 9.9e-154 547.4 445 61.1
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 9.9e-154 547.4 413 67.1
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 2.2e-153 546.2 410 67.6
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 3.8e-153 545.4 417 64.0
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 3.8e-153 545.4 445 60.9
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 1.3e-150 537.0 446 62.8
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 2.3e-150 536.2 416 63.5
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 2.5e-149 532.7 408 65.9
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.3e-148 530.4 446 63.0
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 2.8e-148 529.3 408 65.4
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 9.0e-147 524.2 408 64.7
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 1.5e-146 523.5 346 75.4
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 2.0e-146 523.1 382 68.6
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 1.3e-145 520.4 455 58.2
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.9e-144 516.5 412 60.7
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.6e-143 513.5 413 62.2
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.0e-142 510.8 333 76.3
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 2.3e-142 509.6 411 65.2
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 1.1e-139 500.7 420 61.0
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 1.4e-139 500.4 423 59.1
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.2e-138 497.3 410 62.4
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 2.2e-137 493.0 443 57.6
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 3.3e-133 479.2 360 66.7
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 2.4e-131 473.0 332 69.6
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.7e-129 466.8 300 77.7
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 6.3e-124 448.4 410 58.3
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 2.2e-121 439.9 420 56.7
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.9e-121 439.5 285 75.8
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 2.0e-117 426.8 313 70.9
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.5e-104 384.0 286 67.8
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 4.2e-104 382.5 264 72.7
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 4.0e-102 375.9 421 48.7
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 6.7e-102 375.2 215 86.5
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.5e-101 374.0 415 50.8
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 1.4e-99 367.5 263 71.5
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 6.5e-97 358.6 426 46.9
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 7.2e-96 355.1 223 79.8
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 9.8e-93 344.7 235 73.6
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 2.6e-85 320.1 361 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 5.4e-83 312.4 382 47.4
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 1.2e-82 311.2 319 53.6
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 1.8e-78 297.4 242 60.3
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 5.0e-73 279.3 315 48.3
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 4.7e-71 272.7 253 54.5
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 1.5e-61 241.1 225 54.7
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.4e-59 233.8 137 80.3
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 7.8e-58 228.8 142 76.8
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 6.6e-57 225.7 402 36.8
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 2.5e-56 223.8 166 68.7
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.4e-53 213.0 179 59.2
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 7.6e-53 212.2 154 67.5
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.3e-49 201.4 125 79.2
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 2.3e-41 174.1 406 31.5
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.9e-36 157.1 163 54.0
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 1.9e-35 154.5 306 35.3
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 4.6e-34 149.8 102 69.6
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.3e-31 141.7 108 68.5
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 4.5e-29 133.3 117 64.1
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 7.1e-27 125.9 101 62.4
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 7.9e-26 122.5 362 29.8
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.4e-22 110.9 96 56.2
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 4.9e-20 103.2 218 33.5
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 4.2e-19 100.1 120 52.5
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.9e-17 93.6 65 64.6
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.9e-17 93.6 79 58.2
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 2.2e-15 87.8 54 79.6


User provided reference genes

Program Settings