Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 8.1e-189 663.7 361 100.0
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.1e-136 489.6 358 74.0
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 3.0e-135 485.7 364 73.9
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.0e-135 485.7 358 73.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 4.0e-135 485.3 358 72.6
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 4.4e-134 481.9 358 72.6
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.3e-133 480.3 358 72.9
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.8e-133 479.2 358 72.9
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.8e-132 476.5 361 72.0
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 4.1e-132 475.3 357 71.1
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 1.6e-131 473.4 363 72.7
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 7.7e-131 471.1 362 70.2
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.2e-130 469.5 367 72.5
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 9.4e-129 464.2 362 70.7
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 9.4e-129 464.2 357 70.6
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.2e-128 463.8 334 74.9
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.6e-128 463.4 363 70.2
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 3.6e-128 462.2 364 70.1
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.6e-128 462.2 322 77.3
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 4.0e-127 458.8 368 69.6
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.2e-126 457.2 366 70.2
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.2e-126 457.2 360 71.1
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.0e-126 456.4 362 69.9
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 2.0e-126 456.4 362 70.2
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 4.4e-126 455.3 365 71.5
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.3e-125 453.8 363 70.2
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.3e-125 453.8 370 68.6
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 2.2e-125 453.0 361 68.4
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 8.3e-125 451.1 362 70.7
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 8.3e-125 451.1 364 67.9
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.1e-124 450.7 364 68.1
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.4e-124 450.3 368 69.6
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.4e-124 450.3 361 70.4
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.4e-124 450.3 361 69.5
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.8e-124 449.9 302 79.1
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.4e-124 449.5 361 67.9
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 3.1e-124 449.1 361 70.9
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.2e-123 447.2 365 68.5
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 3.5e-123 445.7 313 72.8
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 4.5e-123 445.3 368 70.4
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 5.9e-123 444.9 365 68.2
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 7.7e-123 444.5 361 68.7
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 7.7e-123 444.5 355 71.0
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.0e-122 444.1 368 69.6
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 5.0e-122 441.8 330 71.5
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 6.6e-122 441.4 334 71.3
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 6.6e-122 441.4 359 68.5
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 8.6e-122 441.0 365 69.0
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.1e-121 440.7 302 73.8
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.5e-121 440.3 351 68.9
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.5e-121 439.5 334 71.3
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 2.5e-121 439.5 383 66.8
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 4.3e-121 438.7 355 69.3
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 5.6e-121 438.3 368 65.5
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 7.3e-121 438.0 357 67.8
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.2e-120 437.2 358 67.9
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.2e-120 437.2 362 67.7
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.1e-120 436.4 369 66.4
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 3.6e-120 435.6 363 66.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.7e-120 435.3 362 67.4
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 4.7e-120 435.3 360 67.5
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 4.7e-120 435.3 360 68.9
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 8.0e-120 434.5 334 71.3
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 8.0e-120 434.5 387 62.8
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 1.0e-119 434.1 301 76.1
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-119 434.1 362 67.4
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.4e-119 433.7 361 67.0
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 2.3e-119 433.0 333 70.9
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 4.0e-119 432.2 331 68.9
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 5.2e-119 431.8 368 67.4
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 5.2e-119 431.8 357 65.5
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 6.8e-119 431.4 364 66.5
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 8.9e-119 431.0 270 82.6
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.2e-118 430.6 375 67.2
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.2e-118 430.6 356 66.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.5e-118 430.3 355 67.0
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.5e-118 430.3 317 73.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.0e-118 429.9 317 72.6
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 2.6e-118 429.5 362 66.6
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.6e-118 429.5 362 66.6
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.6e-118 429.5 362 66.6
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 7.5e-118 427.9 364 67.3
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.5e-118 427.9 294 75.2
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.3e-117 427.2 362 66.0
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.3e-117 427.2 358 66.2
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.7e-117 426.8 313 70.3
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.7e-117 426.8 313 70.3
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 2.2e-117 426.4 298 75.5
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.2e-117 426.4 326 70.2
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.9e-117 426.0 362 66.0
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.9e-117 426.0 364 65.7
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 3.7e-117 425.6 362 67.1
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 3.7e-117 425.6 372 67.2
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 4.9e-117 425.2 259 83.8
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 4.9e-117 425.2 364 70.3
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.4e-116 423.7 360 67.5
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.8e-116 423.3 364 66.8
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.8e-116 423.3 361 65.1
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.8e-116 423.3 365 67.9
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.8e-116 423.3 368 66.6
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.4e-116 422.9 342 69.6
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 5.4e-116 421.8 365 65.8
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 5.4e-116 421.8 363 65.8
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 5.4e-116 421.8 316 73.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 5.4e-116 421.8 405 60.5
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 5.4e-116 421.8 405 60.5
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.6e-115 420.2 363 66.4
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.6e-115 420.2 365 65.5
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.0e-115 419.9 363 66.1
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.7e-115 419.5 342 69.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 2.7e-115 419.5 315 71.1
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 3.5e-115 419.1 364 65.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 5.9e-115 418.3 363 65.8
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 5.9e-115 418.3 363 65.8
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.0e-114 417.5 365 65.2
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.0e-114 417.5 364 64.8
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.9e-113 413.3 362 64.1
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.8e-112 409.5 362 63.8
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.2e-110 404.1 397 59.7
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.6e-110 402.9 357 66.7
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 8.3e-109 397.9 244 83.6
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.9e-108 396.7 296 74.3
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.2e-107 394.0 345 64.3
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-107 394.0 276 75.0
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-107 394.0 303 71.9
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 2.3e-103 379.8 225 85.8
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.1e-103 379.4 451 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.5e-102 377.1 273 72.5
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.5e-102 377.1 363 62.3
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 4.4e-102 375.6 254 74.8
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.3e-101 374.0 359 60.7
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.1e-100 370.9 249 74.7
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.4e-100 368.6 279 69.5
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 9.2e-100 367.9 245 75.9
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 7.3e-97 358.2 286 66.1
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 8.1e-96 354.8 311 63.7
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 7.8e-91 338.2 299 63.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 8.6e-90 334.7 251 67.3
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 3.8e-85 319.3 245 67.3
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.1e-84 317.8 271 61.3
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 5.1e-82 308.9 333 56.2
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 1.5e-62 244.2 251 57.8
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-53 213.8 153 71.2
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 5.0e-53 212.6 165 67.3
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 5.0e-53 212.6 165 67.3
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.1e-52 211.5 153 70.6
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 4.3e-49 199.5 108 95.4
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 2.4e-31 140.6 119 62.2
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.1e-31 140.2 114 66.7
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.0e-31 139.0 102 70.6
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-30 138.3 99 71.7
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.1e-23 115.2 97 64.9
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.7e-21 107.8 61 88.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 3.8e-21 106.7 64 89.1


User provided reference genes

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