Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 2.9e-154 548.5 277 100.0
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 2.3e-122 442.6 277 78.3
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 5.6e-121 438.0 275 77.8
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 9.5e-121 437.2 277 77.3
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 4.0e-119 431.8 277 75.5
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 1.2e-118 430.3 280 76.1
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 2.6e-118 429.1 277 74.4
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 4.4e-118 428.3 270 77.0
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 9.8e-118 427.2 277 72.9
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 4.9e-117 424.9 277 74.0
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 8.3e-117 424.1 277 74.7
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 1.1e-116 423.7 278 73.7
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 5.4e-116 421.4 277 72.6
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.4e-116 421.4 278 73.4
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 5.4e-116 421.4 271 74.5
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 1.6e-115 419.9 277 71.8
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 2.0e-115 419.5 271 74.2
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 2.7e-115 419.1 277 72.9
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.0e-114 417.2 277 73.3
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.3e-114 416.8 277 73.3
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 3.0e-114 415.6 277 72.6
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 3.9e-114 415.2 275 71.6
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 6.6e-114 414.5 275 71.3
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.1e-113 413.7 278 72.7
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.9e-113 412.9 277 71.8
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 1.9e-113 412.9 277 72.6
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 2.5e-113 412.5 270 73.3
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 3.3e-113 412.1 277 71.5
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.2e-112 410.2 277 70.8
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.2e-112 410.2 277 72.2
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 2.8e-112 409.1 277 70.4
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 4.7e-112 408.3 273 71.4
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 4.7e-112 408.3 275 71.3
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 6.2e-112 407.9 271 74.2
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 1.8e-111 406.4 267 70.8
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 1.8e-111 406.4 277 71.5
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 2.3e-111 406.0 277 70.4
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.2e-110 403.7 324 65.7
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.5e-110 403.3 275 70.5
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 2.6e-110 402.5 277 69.3
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 4.4e-110 401.7 277 71.1
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.3e-109 400.2 282 69.5
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 2.2e-109 399.4 277 69.0
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 2.9e-109 399.1 277 69.0
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 3.7e-109 398.7 275 71.6
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.1e-108 397.1 299 66.9
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 1.4e-108 396.7 277 69.3
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 1.9e-108 396.4 277 67.9
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.2e-107 393.7 358 57.3
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 2.7e-107 392.5 277 68.6
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.3e-106 390.2 277 67.9
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.5e-105 386.7 275 68.7
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.9e-105 386.3 278 66.9
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 4.3e-105 385.2 275 66.5
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.6e-104 383.3 293 64.8
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 2.8e-104 382.5 275 70.2
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 2.8e-104 382.5 279 66.3
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 1.4e-103 380.2 268 70.1
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.0e-102 376.3 293 64.2
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 2.0e-102 376.3 277 65.0
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 2.6e-102 375.9 277 67.9
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 4.4e-102 375.2 277 66.1
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.4e-102 375.2 263 70.7
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.7e-101 373.2 277 67.9
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.2e-101 372.9 264 68.6
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 8.4e-101 370.9 239 74.5
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.4e-101 370.9 277 67.5
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 4.1e-100 368.6 240 75.0
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 3.5e-99 365.5 292 61.6
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 1.5e-97 360.1 277 62.5
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 3.6e-96 355.5 275 62.5
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.8e-95 353.2 255 67.1
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 6.4e-93 344.7 277 62.1
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 6.4e-93 344.7 252 66.3
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 1.1e-87 327.4 213 74.2
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 8.4e-85 317.8 314 51.9
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 1.8e-79 300.1 191 78.5
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.3e-79 298.5 277 53.1
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 6.9e-79 298.1 219 66.2
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.8e-78 295.0 212 69.3
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 1.1e-76 290.8 334 50.9
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 5.6e-73 278.5 278 50.7
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.5e-70 268.9 270 50.0
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.7e-69 266.9 190 69.5
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 1.5e-62 243.8 283 47.3
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.0e-61 241.1 283 43.1
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 6.5e-61 238.4 288 43.8
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 3.2e-60 236.1 396 36.4
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.3e-60 234.6 157 75.2
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 9.3e-60 234.6 282 43.3
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 3.3e-57 226.1 267 44.6
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 7.4e-57 224.9 274 43.1
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.6e-56 223.8 202 59.4
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.2e-56 221.5 274 42.0
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.1e-55 221.1 320 39.4
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.8e-55 220.3 133 81.2
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 5.3e-55 218.8 276 42.4
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.9e-55 218.4 274 43.1
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.1e-51 205.3 278 40.6
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 6.1e-51 205.3 271 39.5
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.8e-47 193.7 322 36.0
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-45 187.6 117 79.5
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.2e-44 183.0 237 40.1
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 2.3e-42 176.8 160 62.5
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 9.7e-41 171.4 282 36.9
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 3.1e-39 166.4 266 38.3
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 9.1e-39 164.9 253 37.2
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 1.7e-37 160.6 122 64.8
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.0e-37 159.1 116 62.9
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.5e-36 155.6 112 68.8
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 4.0e-34 149.4 130 61.5
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 8.8e-34 148.3 112 67.0
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.5e-33 147.5 148 55.4
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.3e-33 146.4 182 42.3
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.2e-32 143.7 133 48.9
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 1.4e-31 141.0 264 34.5
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 5.3e-31 139.0 82 76.8
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.5e-30 136.3 125 48.8
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.9e-30 135.6 206 37.4
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 3.8e-29 132.9 85 76.5
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.7e-27 126.7 184 39.7
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 4.4e-25 119.4 115 55.7
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.7e-24 117.5 257 31.1
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.8e-24 116.7 119 48.7
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 7.0e-23 112.1 76 72.4
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.4e-15 85.9 77 51.9
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 9.2e-15 85.1 80 50.0
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.0e-13 81.6 183 33.3
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 2.1e-11 73.9 50 70.0
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 4.0e-10 69.7 261 26.1
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 5.2e-10 69.3 53 64.2
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 5.4e-07 59.3 50 60.0
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 2.0e-06 57.4 41 61.0


User provided reference genes

Program Settings