Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 4.8e-91 337.8 171 100.0
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 3.3e-63 245.4 142 81.7
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.8e-61 239.6 146 77.4
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 1.8e-61 239.6 156 73.1
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 3.1e-61 238.8 151 74.8
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 3.4e-60 235.3 143 76.9
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 7.5e-60 234.2 151 75.5
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 9.8e-60 233.8 153 73.9
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.3e-59 233.4 155 75.5
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 1.3e-59 233.4 145 76.6
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 2.2e-59 232.6 152 75.0
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.9e-59 232.3 144 76.4
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 3.7e-59 231.9 160 71.9
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 8.3e-59 230.7 152 74.3
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 1.1e-58 230.3 144 76.4
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.1e-58 230.3 143 75.5
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.4e-58 229.9 144 74.3
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 1.9e-58 229.6 152 71.1
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 2.4e-58 229.2 144 74.3
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 2.4e-58 229.2 142 76.8
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 3.2e-58 228.8 146 74.7
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.2e-58 228.8 144 75.7
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 4.1e-58 228.4 143 75.5
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 4.1e-58 228.4 150 73.3
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 4.1e-58 228.4 154 72.1
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 5.4e-58 228.0 142 75.4
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 7.1e-58 227.6 152 71.1
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 7.1e-58 227.6 152 71.1
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.2e-57 226.9 152 71.7
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 1.6e-57 226.5 141 75.2
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 2.1e-57 226.1 143 73.4
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 2.7e-57 225.7 144 72.9
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 4.6e-57 224.9 163 68.7
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 4.6e-57 224.9 143 76.2
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 4.6e-57 224.9 145 73.1
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 4.6e-57 224.9 146 74.0
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 6.0e-57 224.6 143 74.1
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 6.0e-57 224.6 143 74.1
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 6.0e-57 224.6 144 72.9
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 7.8e-57 224.2 143 74.8
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 7.8e-57 224.2 146 73.3
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 7.8e-57 224.2 144 74.3
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 1.0e-56 223.8 161 67.7
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.3e-56 223.4 143 72.7
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.7e-56 223.0 156 69.9
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.7e-56 223.0 142 75.4
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.7e-56 223.0 151 72.2
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.3e-56 222.6 142 72.5
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 3.0e-56 222.2 152 69.1
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 3.9e-56 221.9 140 73.6
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 3.9e-56 221.9 154 70.1
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 3.9e-56 221.9 143 72.7
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 6.6e-56 221.1 143 73.4
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 6.6e-56 221.1 146 72.6
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 1.1e-55 220.3 143 74.8
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.5e-55 219.9 146 71.9
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 1.5e-55 219.9 151 70.2
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 4.3e-55 218.4 152 67.8
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 4.3e-55 218.4 147 70.1
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 5.6e-55 218.0 155 68.4
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 7.3e-55 217.6 152 71.7
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.3e-55 217.6 143 72.7
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.5e-55 217.2 142 73.9
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 9.5e-55 217.2 142 73.2
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.1e-54 216.1 191 59.2
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 1.1e-53 213.8 148 70.3
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 6.8e-53 211.1 145 71.7
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 2.9e-51 205.7 141 70.2
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 6.4e-51 204.5 140 69.3
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 1.9e-50 203.0 142 71.1
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.2e-50 202.2 141 69.5
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 7.1e-50 201.1 150 66.0
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 1.7e-48 196.4 131 70.2
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 3.0e-48 195.7 206 51.9
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 5.6e-47 191.4 149 63.1
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 4.7e-46 188.3 155 60.0
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 2.2e-43 179.5 152 56.6
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 1.0e-40 170.6 95 84.2
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 1.5e-39 166.8 134 58.2
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 4.3e-39 165.2 92 82.6
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 4.3e-39 165.2 94 80.9
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 6.2e-38 161.4 137 56.2
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.1e-37 160.6 117 65.0
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.4e-37 160.2 152 53.3
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 9.9e-36 154.1 102 71.6
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 7.3e-31 137.9 100 64.0
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.2e-28 130.6 148 50.0
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.4e-26 121.7 145 41.4
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.1e-25 119.8 146 40.4
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.7e-25 119.4 113 51.3
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.7e-24 114.8 146 42.5
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.7e-24 114.4 145 42.8
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 7.4e-23 111.3 151 42.4
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 6.9e-21 104.8 149 40.3
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-20 104.0 147 36.1
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.0e-20 103.2 161 38.5
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 7.6e-20 101.3 136 39.0
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 7.6e-20 101.3 144 38.2
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 4.9e-19 98.6 55 80.0
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.9e-19 98.6 139 36.0
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 2.7e-17 92.8 124 38.7
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.7e-15 85.1 145 37.2
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 9.6e-15 84.3 137 34.3
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 6.2e-14 81.6 126 38.1
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.4e-13 80.5 104 35.6
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 5.8e-12 75.1 96 40.6
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.9e-11 72.8 135 34.1
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 1.0e-08 64.3 50 58.0
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 3.9e-08 62.4 97 39.2
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 8.7e-08 61.2 101 33.7
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 1.5e-07 60.5 84 44.0
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.3e-07 58.9 47 55.3
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 4.8e-06 55.5 100 36.0


User provided reference genes

Program Settings