Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.6e-126 456.1 223 100.0
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.5e-108 396.4 223 87.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.8e-106 389.4 225 85.3
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 3.1e-106 388.7 225 84.9
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 6.9e-106 387.5 225 85.3
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.5e-105 386.3 225 84.4
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.5e-105 384.8 225 83.6
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 8.5e-104 380.6 225 83.6
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.4e-103 379.8 225 84.0
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.9e-103 379.4 224 84.4
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 84.0
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 3.6e-102 375.2 225 81.8
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 4.7e-102 374.8 224 80.8
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 81.8
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 81.8
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 6.7e-101 370.9 225 81.3
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 6.7e-101 370.9 225 81.3
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 4.4e-100 368.2 225 80.0
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 4.4e-100 368.2 225 81.8
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.7e-100 367.9 226 81.0
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.7e-100 367.9 226 81.0
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 5.7e-100 367.9 224 80.8
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 7.4e-100 367.5 225 79.1
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 7.4e-100 367.5 226 81.4
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.3e-99 366.7 225 80.9
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 3.7e-99 365.2 225 79.1
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 4.8e-99 364.8 225 80.4
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.3e-99 364.4 225 79.1
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 6.3e-99 364.4 266 71.1
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.8e-98 362.8 225 79.6
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.1e-98 362.1 225 79.6
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 4.1e-98 361.7 225 78.7
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 4.1e-98 361.7 225 77.8
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 7.0e-98 360.9 224 79.9
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 9.1e-98 360.5 225 79.6
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.5e-97 358.2 225 78.7
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.5e-97 358.2 225 78.7
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.9e-97 357.8 225 77.8
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.3e-96 356.7 225 78.7
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 78.7
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 77.3
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.2e-96 355.9 225 77.3
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 3.8e-96 355.1 225 79.1
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.8e-96 355.1 225 78.2
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 6.5e-96 354.4 223 78.5
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 76.4
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 3.2e-95 352.1 225 77.3
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.6e-94 349.7 226 75.7
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 78.7
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 76.0
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 78.2
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 76.4
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 77.3
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 76.4
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 76.9
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 1.8e-93 346.3 226 76.1
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.0e-93 345.5 225 76.9
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.1e-92 343.6 279 64.5
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 9.7e-92 340.5 225 75.1
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 73.3
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 74.7
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 2.2e-91 339.3 225 73.3
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.8e-90 336.3 225 74.7
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.8e-90 336.3 225 72.0
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.2e-89 333.6 203 81.8
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 72.9
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.7e-88 329.7 208 79.8
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.2e-88 329.3 225 73.8
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 2.9e-88 328.9 225 73.8
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 3.8e-88 328.6 197 81.7
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.1e-87 327.0 260 65.8
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 72.4
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.5e-87 325.9 225 72.9
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 3.2e-87 325.5 228 72.8
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 4.2e-87 325.1 225 72.0
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 1.2e-86 323.6 225 70.7
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.6e-86 323.2 225 72.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.6e-86 323.2 225 72.0
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 4.7e-86 321.6 225 70.7
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 8.0e-86 320.9 225 69.8
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.0e-85 320.5 225 72.0
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 1.4e-85 320.1 225 70.2
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.8e-85 319.7 225 71.1
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.3e-85 319.3 225 71.6
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 2.3e-85 319.3 220 72.7
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 3.0e-85 318.9 225 71.6
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 3.0e-85 318.9 225 71.6
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 3.0e-85 318.9 225 70.7
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 6.8e-85 317.8 225 71.1
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 8.8e-85 317.4 225 70.7
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 5.7e-84 314.7 232 66.8
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.2e-83 312.8 226 69.9
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 4.5e-81 305.1 225 70.7
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 5.9e-81 304.7 225 68.0
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 7.7e-81 304.3 224 66.1
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 1.0e-80 303.9 225 69.8
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 8.5e-80 300.8 228 67.1
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.1e-79 300.4 224 68.3
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.5e-79 300.1 225 65.8
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.5e-79 300.1 227 67.8
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.5e-79 300.1 227 67.4
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 4.2e-79 298.5 225 65.8
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 2.1e-78 296.2 217 69.1
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 8.0e-78 294.3 225 65.8
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 4.9e-75 285.0 224 67.4
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 1.1e-74 283.9 177 79.7
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 4.1e-74 282.0 225 64.9
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.2e-73 280.4 227 61.7
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.5e-71 273.5 224 65.2
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 2.5e-71 272.7 225 60.9
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 2.0e-68 263.1 227 61.2
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 3.7e-67 258.8 225 59.6
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 8.3e-67 257.7 253 57.7
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 8.3e-67 257.7 253 57.7
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 1.8e-66 256.5 210 61.4
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.3e-64 250.4 174 71.8
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 6.6e-64 248.1 229 60.3
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.9e-63 246.5 225 55.1
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 3.3e-63 245.7 243 53.9
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 2.1e-62 243.0 250 57.2
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 4.3e-55 218.8 163 68.1
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 2.0e-52 209.9 224 49.1
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 5.8e-52 208.4 225 48.4
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 9.2e-50 201.1 225 46.7
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.6e-47 191.8 122 73.8
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 8.9e-45 184.5 205 47.3
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.3e-43 180.6 231 44.2
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 9.2e-42 174.5 228 43.0
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.4e-37 159.8 100 77.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.9e-37 158.3 100 76.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 8.9e-37 157.9 129 61.2
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 3.5e-33 146.0 207 46.4
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 6.9e-29 131.7 150 50.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.7e-25 119.8 72 76.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.8e-19 99.4 51 90.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.4e-19 98.6 51 88.2
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.4e-19 98.6 51 88.2
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-18 97.4 51 88.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 1.9e-18 97.1 66 65.2
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.2e-17 94.4 79 60.8
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.7e-17 93.2 105 50.5
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 1.3e-16 90.9 78 56.4
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 3.0e-16 89.7 127 44.1
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 6.2e-14 82.0 98 53.1
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.4e-12 76.3 51 78.4
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.4e-12 76.3 51 74.5
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.9e-11 72.4 226 29.6
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.2e-09 67.8 51 64.7
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 2.1e-09 67.0 63 58.7
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.0e-08 64.7 56 60.7


User provided reference genes

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