Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g08710 Coffea canephora HOM05D000960 ORTHO05D000683 4.5e-107 391.3 211 100.0
Nitab4.5_0000742g0120 Nicotiana tabacum HOM05D008784 ORTHO05D000683 5.9e-30 135.2 214 42.1
Manes.15G127600 Manihot esculenta HOM05D000960 ORTHO05D000683 2.5e-28 129.8 213 41.8
CiPaw.05G249800 Carya illinoinensis HOM05D000960 ORTHO05D000683 7.2e-28 128.3 216 40.3
PGSC0003DMG402030499 Solanum tuberosum HOM05D008784 ORTHO05D000683 2.7e-27 126.3 213 42.3
Actinidia14972 Actinidia chinensis HOM05D000960 ORTHO05D000683 3.6e-27 125.9 215 43.3
Sopen05g003930 Solanum pennellii HOM05D008784 ORTHO05D000683 2.6e-25 119.8 213 42.7
Solyc05g008090.3 Solanum lycopersicum HOM05D008784 ORTHO05D000683 5.7e-25 118.6 213 41.8
Potri.010G113000 Populus trichocarpa HOM05D000960 ORTHO05D000683 9.7e-25 117.9 212 39.6
CAN.G1298.4 Capsicum annuum HOM05D008784 ORTHO05D000683 1.3e-24 117.5 212 39.2
Actinidia36668 Actinidia chinensis HOM05D000960 ORTHO05D000683 1.4e-23 114.0 216 41.2
Manes.17G077000 Manihot esculenta HOM05D000960 ORTHO05D000683 3.1e-23 112.8 212 37.3
Ciclev10014569m.g Citrus clementina HOM05D000960 ORTHO05D000683 4.1e-23 112.5 212 41.0
CiPaw.06G011900 Carya illinoinensis HOM05D000778 ORTHO05D000683 5.3e-23 112.1 220 40.5
Potri.008G129300 Populus trichocarpa HOM05D000960 ORTHO05D000683 2.6e-22 109.8 213 40.4
Peaxi162Scf00159g00516 Petunia axillaris HOM05D000960 ORTHO05D000683 4.5e-22 109.0 210 37.1
TAR371G0867 Trochodendron aralioides HOM05D000960 ORTHO05D000683 7.7e-22 108.2 216 39.8
Lj6A746T52 Lonicera japonica HOM05D000778 ORTHO05D000683 3.8e-21 105.9 213 39.0
Nn4g24151 Nelumbo nucifera HOM05D000960 ORTHO05D000683 6.5e-21 105.1 218 39.0
Dinv07645 Davidia involucrata HOM05D000960 ORTHO05D000683 4.2e-20 102.4 200 39.0
PSO478G1986 Papaver somniferum HOM05D000960 ORTHO05D000683 9.4e-20 101.3 212 35.4
GSVIVG01011757001 Vitis vinifera HOM05D000960 ORTHO05D000683 1.2e-19 100.9 209 38.8
MD16G1028300 Malus domestica HOM05D000960 ORTHO05D000683 1.6e-19 100.5 218 40.4
Prupe.1G324700 Prunus persica HOM05D000960 ORTHO05D000683 1.6e-19 100.5 218 38.5
Duzib248G0884 Durio zibethinus HOM05D000960 ORTHO05D000683 3.6e-19 99.4 213 39.0
Nn3g18221 Nelumbo nucifera HOM05D000960 ORTHO05D000683 3.6e-19 99.4 219 41.6
PSO017G0929 Papaver somniferum HOM05D000960 ORTHO05D000683 3.6e-19 99.4 212 35.8
Thecc.02G281700 Theobroma cacao HOM05D000960 ORTHO05D000683 1.1e-17 94.4 216 35.6
Sabra10G0083100 Salix brachista HOM05D000960 ORTHO05D000683 1.5e-17 94.0 197 37.1
CAN.G2091.2 Capsicum annuum HOM05D008784 ORTHO05D000683 4.4e-17 92.4 211 37.4
CAN.G1572.12 Capsicum annuum HOM05D008784 ORTHO05D000683 5.7e-17 92.0 123 47.2
TWI79G0468 Tripterygium wilfordii HOM05D000960 ORTHO05D000683 5.7e-17 92.0 209 37.3
Atru.chr11.535 Acer truncatum HOM05D000960 ORTHO05D000683 7.5e-17 91.7 222 36.0
COL.COLO4_20482 Corchorus olitorius HOM05D000960 ORTHO05D000683 2.2e-16 90.1 213 37.1
DCAR_030220 Daucus carota HOM05D000960 ORTHO05D000683 2.8e-16 89.7 218 34.9
Duzib268G0306 Durio zibethinus HOM05D000960 ORTHO05D000683 6.3e-16 88.6 214 35.5
CAN.G610.15 Capsicum annuum HOM05D008784 ORTHO05D000683 1.4e-15 87.4 262 32.4
MSTRG.13590 Avicennia marina HOM05D000960 ORTHO05D000683 1.2e-14 84.3 211 33.6
FvH4_4g32430 Fragaria vesca HOM05D000960 ORTHO05D000683 2.0e-14 83.6 212 33.0
FAN12G3287 Fragaria x ananassa HOM05D000960 ORTHO05D000683 2.0e-14 83.6 212 33.0
FAN17G0664 Fragaria x ananassa HOM05D000960 ORTHO05D000683 2.0e-14 83.6 212 34.9
Glyma.20G014200 Glycine max HOM05D000960 ORTHO05D000683 3.5e-14 82.8 222 38.7
Gohir.A12G150600 Gossypium hirsutum HOM05D000960 ORTHO05D000683 3.5e-14 82.8 212 35.8
RcHm_v2.0_Chr4g0441291 Rosa chinensis HOM05D000960 ORTHO05D000683 3.5e-14 82.8 213 35.7
FAN07G2535 Fragaria x ananassa HOM05D000960 ORTHO05D000683 5.9e-14 82.0 212 35.8
VMungo0251G1345 Vigna mungo HOM05D000960 ORTHO05D000683 1.0e-13 81.3 219 34.7
Lalb_Chr05g0219461 Lupinus albus HOM05D000960 ORTHO05D000683 1.7e-13 80.5 214 36.0
CAN.G309.94 Capsicum annuum HOM05D008784 ORTHO05D024788 6.5e-13 78.6 224 34.8
FAN22G2080 Fragaria x ananassa HOM05D000960 ORTHO05D000683 6.5e-13 78.6 212 35.4
Dinv05172 Davidia involucrata HOM05D000960 ORTHO05D000683 8.5e-13 78.2 209 34.0
Aqoxy3G00133 Aquilegia oxysepala HOM05D000960 ORTHO05D000683 2.5e-12 76.6 224 30.4
Eucgr.G02189 Eucalyptus grandis HOM05D000960 ORTHO05D000683 2.5e-12 76.6 208 35.1
Glyma.07G217600 Glycine max HOM05D000960 ORTHO05D000683 2.5e-12 76.6 217 38.7
vmacro10643 Vaccinium macrocarpon HOM05D000960 ORTHO05D000683 9.4e-12 74.7 198 36.9
Phvul.002G093500 Phaseolus vulgaris HOM05D000960 ORTHO05D000683 1.2e-11 74.3 214 34.1
Gorai.008G166700 Gossypium raimondii HOM05D000960 ORTHO05D000683 3.6e-11 72.8 199 35.2
CAN.G2365.1 Capsicum annuum HOM05D008784 ORTHO05D000683 6.1e-11 72.0 52 67.3
Haze_11005 Corylus avellana HOM05D000960 ORTHO05D000683 6.1e-11 72.0 200 31.5
Gohir.D12G154300 Gossypium hirsutum HOM05D000960 ORTHO05D000683 8.0e-11 71.6 199 35.2
Gorai.005G162000 Gossypium raimondii HOM05D000960 ORTHO05D000683 8.0e-11 71.6 222 35.1
Gohir.D02G144600 Gossypium hirsutum HOM05D000960 ORTHO05D000683 1.0e-10 71.2 213 36.6
ECA246G1173 Erigeron canadensis HOM05D000960 ORTHO05D000683 1.4e-10 70.9 164 36.6
Gohir.A03G121700 Gossypium hirsutum HOM05D000960 ORTHO05D000683 1.4e-10 70.9 93 48.4
CAN.G4170.1 Capsicum annuum HOM05D000778 ORTHO05D000683 1.8e-10 70.5 54 64.8
SalBow8G3618 Salvia bowleyana HOM05D000778 ORTHO05D000683 1.8e-10 70.5 150 36.0
SalBow8G4950 Salvia bowleyana HOM05D000960 ORTHO05D000683 1.8e-10 70.5 150 36.0
MBI16_g14304_MAGBIO Magnolia biondii HOM05D000960 ORTHO05D000683 2.3e-10 70.1 222 33.3
Hma1.2p1_0096F.1_g047920 Hydrangea macrophylla HOM05D000960 ORTHO05D000683 4.0e-10 69.3 198 32.3
Rhsim09G0097700 Rhododendron simsii HOM05D000960 ORTHO05D000683 6.8e-10 68.6 199 32.2
QL01p001723 Quercus lobata HOM05D000960 ORTHO05D000683 1.2e-09 67.8 213 31.0
CAN.G202.1 Capsicum annuum HOM05D008784 ORTHO05D000683 3.4e-09 66.2 269 29.0
Cpa.g.sc65.136 Carica papaya HOM05D000960 ORTHO05D000683 4.4e-09 65.9 166 36.1
Cfa008609 Carpinus fangiana HOM05D000960 ORTHO05D000683 1.7e-08 63.9 201 30.3
SEGI_33792 Sequoiadendron giganteum HOM05D000960 ORTHO05D000683 1.7e-08 63.9 71 47.9
CAN.G2101.3 Capsicum annuum HOM05D008784 ORTHO05D000683 2.8e-08 63.2 52 63.5
CAN.G2289.2 Capsicum annuum HOM05D000960 ORTHO05D000683 3.7e-08 62.8 52 61.5
CAN.G5544.1 Capsicum annuum HOM05D000778 ORTHO05D000601 4.8e-08 62.4 53 60.4
Cpa.g.sc222.23 Carica papaya HOM05D000778 ORTHO05D000601 8.3e-08 61.6 76 48.7
AL2G30480 Arabidopsis lyrata HOM05D000960 ORTHO05D000683 1.1e-07 61.2 52 59.6
ATR0053G056 Amborella trichopoda HOM05D000960 ORTHO05D000683 1.4e-07 60.8 127 42.5
Migut.I00497 Erythranthe guttata HOM05D000778 ORTHO05D000683 1.4e-07 60.8 64 54.7
MSTRG.2169 Avicennia marina HOM05D000960 ORTHO05D000683 2.4e-07 60.1 122 35.2
BcaB03g14858 Brassica carinata HOM05D000960 ORTHO05D000683 2.4e-07 60.1 83 49.4
HanXRQChr15g0484531 Helianthus annuus HOM05D000960 ORTHO05D000683 2.4e-07 60.1 70 50.0
CAN.G567.119 Capsicum annuum HOM05D008784 ORTHO05D000683 3.1e-07 59.7 151 35.8
Aa31LG4G10110 Aethionema arabicum HOM05D000960 ORTHO05D000683 4.1e-07 59.3 100 39.0
Ciclev10008326m.g Citrus clementina HOM05D000778 ORTHO05D000601 4.1e-07 59.3 82 46.3
SEGI_34158 Sequoiadendron giganteum HOM05D000778 ORTHO05D000601 5.4e-07 58.9 73 46.6
SGA_v2.0_scaffold38G15108 Striga asiatica HOM05D000960 ORTHO05D000683 5.4e-07 58.9 80 47.5
A07p37370 Brassica napus HOM05D000960 ORTHO05D000683 7.0e-07 58.5 102 46.1
BraA07t31295Z Brassica rapa HOM05D000960 ORTHO05D000683 7.0e-07 58.5 102 46.1
Potri.016G066600 Populus trichocarpa HOM05D000778 ORTHO05D000601 7.0e-07 58.5 83 44.6
Carub.0002s1773 Capsella rubella HOM05D000960 ORTHO05D000683 9.1e-07 58.2 90 45.6
CAN.G2141.2 Capsicum annuum HOM05D008784 ORTHO05D000683 9.1e-07 58.2 195 31.8
CAN.G2314.1 Capsicum annuum HOM05D008784 ORTHO05D000683 9.1e-07 58.2 111 42.3
CAN.G2381.1 Capsicum annuum HOM05D008784 ORTHO05D000683 9.1e-07 58.2 52 59.6
Thecc.05G108900 Theobroma cacao HOM05D000778 ORTHO05D000601 9.1e-07 58.2 71 47.9
Atru.chr8.1297 Acer truncatum HOM05D000778 ORTHO05D000601 1.6e-06 57.4 85 44.7
SalBow5G4642 Salvia bowleyana HOM05D000778 ORTHO05D000601 1.6e-06 57.4 96 36.5
Sc23g0006730 Simmondsia chinensis HOM05D000778 ORTHO05D000601 1.6e-06 57.4 43 65.1
THA.LOC104823012 Tarenaya hassleriana HOM05D000960 ORTHO05D000683 1.6e-06 57.4 63 54.0
AT1G70950 Arabidopsis thaliana HOM05D000960 ORTHO05D000683 2.0e-06 57.0 109 40.4
Migut.L00990 Erythranthe guttata HOM05D000778 ORTHO05D000683 2.0e-06 57.0 168 31.0
Gohir.D06G100200 Gossypium hirsutum HOM05D000778 ORTHO05D000601 2.0e-06 57.0 106 37.7
Gorai.010G115100 Gossypium raimondii HOM05D000778 ORTHO05D000601 2.0e-06 57.0 106 37.7
Potri.006G200400 Populus trichocarpa HOM05D000778 ORTHO05D000601 2.0e-06 57.0 151 33.8
Sabra06G0154300 Salix brachista HOM05D000778 ORTHO05D000601 2.0e-06 57.0 42 66.7
THA.LOC104803839 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 2.0e-06 57.0 43 65.1
BcaC08g46542 Brassica carinata HOM05D000960 ORTHO05D000683 2.7e-06 56.6 83 48.2
Duzib128G1870 Durio zibethinus HOM05D000778 ORTHO05D000601 2.7e-06 56.6 71 47.9
Gohir.A06G098218 Gossypium hirsutum HOM05D000778 ORTHO05D000601 2.7e-06 56.6 106 38.7
Lsat_1_v5_gn_3_54841 Lactuca sativa HOM05D000960 ORTHO05D000683 2.7e-06 56.6 127 40.9
Os11g0571900 Oryza sativa ssp. japonica HOM05D000778 ORTHO05D000601 2.7e-06 56.6 85 43.5
THA.LOC104818621 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 2.7e-06 56.6 43 65.1
Cc06_g06890 Coffea canephora HOM05D000778 ORTHO05D000601 3.5e-06 56.2 69 47.8
Glyma.14G116600 Glycine max HOM05D000778 ORTHO05D000601 3.5e-06 56.2 85 47.1
Potri.006G254400 Populus trichocarpa HOM05D000778 ORTHO05D000601 3.5e-06 56.2 71 49.3
Sp5g26120 Schrenkiella parvula HOM05D000960 ORTHO05D000683 3.5e-06 56.2 100 44.0
C06p45050 Brassica napus HOM05D000960 ORTHO05D000683 4.5e-06 55.8 100 45.0
CAN.G1230.7 Capsicum annuum HOM05D000778 ORTHO05D000601 4.5e-06 55.8 70 50.0
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 4.5e-06 55.8 43 62.8
CAN.G567.122 Capsicum annuum HOM05D008784 ORTHO05D000683 4.5e-06 55.8 53 54.7
Duzib106G2033 Durio zibethinus HOM05D000778 ORTHO05D000601 4.5e-06 55.8 71 46.5
Sed0001287 Sechium edule HOM05D000778 ORTHO05D000601 4.5e-06 55.8 85 41.2
BcaB03g14856 Brassica carinata HOM05D000960 ORTHO05D000683 5.9e-06 55.5 98 45.9
Nitab4.5_0000109g0300 Nicotiana tabacum HOM05D000778 ORTHO05D000601 5.9e-06 55.5 70 50.0
Os02g0200800 Oryza sativa ssp. japonica HOM05D000778 ORTHO05D000601 5.9e-06 55.5 43 60.5
Sc09g0008270 Simmondsia chinensis HOM05D000778 ORTHO05D000601 5.9e-06 55.5 43 62.8
THA.LOC104803659 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 5.9e-06 55.5 43 62.8
Zm00001eb205790 Zea mays HOM05D000778 ORTHO05D000601 5.9e-06 55.5 43 60.5
Zm00001eb235840 Zea mays HOM05D000778 ORTHO05D000601 5.9e-06 55.5 43 60.5
BcaB03g12742 Brassica carinata HOM05D000778 ORTHO05D000601 7.7e-06 55.1 42 61.9
BcaC01g01029 Brassica carinata HOM05D000778 ORTHO05D000601 7.7e-06 55.1 42 61.9
A08p18220 Brassica napus HOM05D000778 ORTHO05D000601 7.7e-06 55.1 42 61.9
C03p87390 Brassica napus HOM05D000038 ORTHO05D000423 7.7e-06 55.1 42 61.9
BolC3t21047H Brassica oleracea HOM05D000778 ORTHO05D000601 7.7e-06 55.1 42 61.9
BolC6t39563H Brassica oleracea HOM05D000960 ORTHO05D000683 7.7e-06 55.1 100 45.0
BraA08t33781Z Brassica rapa HOM05D000778 ORTHO05D000601 7.7e-06 55.1 42 61.9
Thhalv10025240m.g Eutrema salsugineum HOM05D000778 ORTHO05D000601 7.7e-06 55.1 42 61.9
Glyma.17G211100 Glycine max HOM05D000778 ORTHO05D000601 7.7e-06 55.1 85 45.9
Sp7g30090 Schrenkiella parvula HOM05D000778 ORTHO05D000601 7.7e-06 55.1 42 61.9


User provided reference genes

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