Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 1.1e-254 882.9 454 100.0
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 2.6e-232 808.5 454 91.6
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 2.6e-144 516.2 358 70.7
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 5.0e-143 511.9 453 61.6
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 1.9e-142 510.0 450 62.9
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 3.2e-142 509.2 382 68.6
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 4.2e-142 508.8 380 69.2
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 7.2e-142 508.1 417 63.5
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 7.2e-142 508.1 450 61.3
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 1.2e-141 507.3 464 59.3
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 1.6e-141 506.9 351 71.8
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.1e-141 506.5 371 70.1
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 4.7e-141 505.4 392 67.6
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.0e-140 502.7 357 70.9
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.0e-139 500.0 372 69.1
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 4.4e-139 498.8 379 67.5
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 9.7e-139 497.7 435 63.2
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 3.7e-138 495.7 467 59.1
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 6.3e-138 495.0 466 58.2
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 6.3e-138 495.0 468 60.0
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 3.1e-137 492.7 468 59.8
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 1.2e-136 490.7 519 54.7
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.5e-136 490.3 413 63.7
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.6e-136 489.6 457 59.1
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 4.5e-136 488.8 445 58.7
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.7e-135 486.9 357 69.2
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 1.4e-134 483.8 409 63.3
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 5.5e-134 481.9 448 58.7
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 4.7e-133 478.8 377 64.2
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.8e-132 476.9 433 58.9
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 3.9e-132 475.7 452 58.0
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 3.3e-131 472.6 380 64.2
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 8.2e-130 468.0 379 65.7
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 1.8e-129 466.8 381 61.9
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 2.4e-129 466.5 375 63.7
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 9.1e-129 464.5 357 64.7
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.2e-128 464.2 429 58.5
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 1.2e-128 464.2 359 67.7
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 2.0e-128 463.4 347 67.1
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 2.6e-128 463.0 454 55.9
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 2.6e-128 463.0 369 64.2
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 5.9e-128 461.8 386 60.1
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-127 461.1 357 66.9
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 1.3e-127 460.7 368 63.6
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 1.7e-127 460.3 439 57.9
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 2.9e-127 459.5 436 57.6
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 5.0e-127 458.8 418 58.6
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 5.0e-127 458.8 451 55.4
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 8.5e-127 458.0 412 59.7
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 8.5e-127 458.0 358 65.1
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.5e-126 457.2 450 54.2
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.5e-126 457.2 348 66.7
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.9e-126 456.8 346 67.6
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 4.2e-126 455.7 446 55.6
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 5.5e-126 455.3 388 59.5
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 5.5e-126 455.3 359 63.2
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 5.5e-126 455.3 454 56.6
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 5.5e-126 455.3 337 68.8
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 7.2e-126 454.9 414 57.2
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 9.4e-126 454.5 363 64.5
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 1.6e-125 453.8 457 54.9
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 4.7e-125 452.2 395 60.8
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 8.0e-125 451.4 345 67.5
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 1.0e-124 451.1 425 56.9
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 3.0e-124 449.5 359 63.8
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.2e-123 447.6 354 65.8
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.5e-123 444.9 371 62.5
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 9.7e-123 444.5 340 65.6
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 9.7e-123 444.5 342 65.2
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 1.7e-122 443.7 379 60.7
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 2.8e-122 443.0 460 53.0
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 6.3e-122 441.8 404 57.4
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 2.4e-121 439.9 432 55.6
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 3.1e-121 439.5 325 70.5
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 5.3e-121 438.7 485 50.5
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 5.9e-120 435.3 452 53.8
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 7.7e-120 434.9 314 68.2
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.7e-120 434.9 371 60.4
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.5e-118 429.9 329 66.9
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 3.2e-118 429.5 349 59.6
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 6.1e-117 425.2 345 61.2
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 1.2e-115 421.0 381 56.7
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 7.5e-115 418.3 363 60.6
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 3.1e-113 412.9 349 59.3
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.2e-112 411.0 383 57.2
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 7.2e-110 401.7 317 62.5
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 6.1e-109 398.7 522 46.2
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 7.5e-107 391.7 299 63.5
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 4.9e-106 389.0 346 59.2
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 8.3e-106 388.3 330 62.7
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 5.4e-105 385.6 294 63.3
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 1.3e-103 380.9 347 58.5
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.5e-102 377.5 256 69.5
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.3e-100 370.2 409 50.1
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 8.9e-100 368.2 251 69.7
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-99 367.5 371 55.0
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 3.1e-84 316.6 407 49.1
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 1.6e-80 304.3 212 71.7
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.9e-79 299.7 314 53.5
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 3.3e-78 296.6 236 64.8
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 3.4e-75 286.6 339 43.1
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 5.4e-73 279.3 207 66.7
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 8.1e-69 265.4 282 53.5
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 7.6e-67 258.8 278 52.2
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.8e-66 256.5 233 54.5
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 1.4e-65 254.6 276 55.8
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 3.3e-62 243.4 223 55.6
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.6e-59 232.3 233 56.7
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 6.4e-58 229.2 191 63.9
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.3e-55 221.5 290 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.6e-53 214.5 280 41.1
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 6.4e-50 202.6 182 53.8
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 1.9e-46 191.0 203 51.7
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 1.3e-37 161.8 197 50.8
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.7e-37 160.2 188 46.8
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 1.1e-36 158.7 111 64.0
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 9.0e-36 155.6 146 51.4
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 2.2e-34 151.0 254 39.4
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 2.6e-27 127.5 163 47.2
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 2.2e-26 124.4 82 65.9
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 2.9e-26 124.0 229 37.1
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 9.4e-25 119.0 340 29.1
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 1.2e-24 118.6 193 42.0
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 1.6e-24 118.2 196 37.8
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 4.7e-24 116.7 333 27.9
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 1.0e-23 115.5 106 63.2
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.8e-23 114.8 237 32.9
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 2.3e-23 114.4 78 74.4
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 2.3e-23 114.4 191 39.8
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 8.8e-23 112.5 104 55.8
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 5.7e-22 109.8 104 56.7
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 3.1e-20 104.0 168 34.5
Mapoly0003s0267 Marchantia polymorpha HOM05D032652 ORTHO05D005510 7.0e-20 102.8 298 29.9
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 1.5e-19 101.7 63 76.2
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 2.0e-19 101.3 107 52.3
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 2.6e-19 100.9 144 43.1
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 3.6e-16 90.5 360 26.9
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 2.3e-15 87.8 59 72.9
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 3.9e-15 87.0 270 25.9
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 6.7e-15 86.3 293 24.6
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 2.0e-14 84.7 271 25.8
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 4.8e-13 80.1 56 62.5
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 8.2e-13 79.3 277 24.9
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 1.4e-12 78.6 71 56.3
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.9e-09 68.2 62 48.4
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 1.6e-08 65.1 192 26.6
MCO15G091 Micromonas commoda HOM05D036318 ORTHO05D005510 7.5e-06 56.2 341 23.8


User provided reference genes

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