Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g08260 Coffea canephora HOM05D006947 ORTHO05D008818 0.0e+00 1627.5 850 100.0
Dinv28045 Davidia involucrata HOM05D006947 ORTHO05D008818 0.0e+00 1119.4 860 69.2
CSS0036590 Camellia sinensis var. sinensis HOM05D006947 ORTHO05D008818 0.0e+00 1082.4 856 67.4
Nitab4.5_0000282g0010 Nicotiana tabacum HOM05D006947 ORTHO05D008818 1.4e-300 1036.2 856 66.2
Peaxi162Scf00376g00128 Petunia axillaris HOM05D006947 ORTHO05D008818 1.7e-298 1029.2 857 65.5
TAR622G0063 Trochodendron aralioides HOM05D006947 ORTHO05D008818 2.3e-298 1028.9 856 65.4
Hma1.2p1_0330F.1_g127400 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 5.0e-298 1027.7 772 69.4
GSVIVG01011706001 Vitis vinifera HOM05D006947 ORTHO05D008818 2.2e-293 1012.3 771 69.6
Cfa014981 Carpinus fangiana HOM05D006947 ORTHO05D008818 2.3e-290 1002.3 864 63.0
DCAR_026786 Daucus carota HOM05D006947 ORTHO05D008818 3.1e-287 991.9 776 67.4
Haze_10941 Corylus avellana HOM05D006947 ORTHO05D008818 1.7e-285 986.1 801 65.5
Sopen05g023090 Solanum pennellii HOM05D006947 ORTHO05D008818 2.2e-285 985.7 847 62.8
Manes.17G080500 Manihot esculenta HOM05D006947 ORTHO05D008818 8.4e-285 983.8 871 61.4
CiPaw.06G048400 Carya illinoinensis HOM05D006947 ORTHO05D008818 2.4e-284 982.2 860 62.7
Solyc05g026560.3 Solanum lycopersicum HOM05D006947 ORTHO05D008818 2.7e-283 978.8 857 62.2
Ciclev10014242m.g Citrus clementina HOM05D006947 ORTHO05D008818 8.6e-282 973.8 801 64.9
Gorai.002G176700 Gossypium raimondii HOM05D006947 ORTHO05D008818 8.6e-282 973.8 841 62.9
TWI74G1199 Tripterygium wilfordii HOM05D006947 ORTHO05D008818 8.9e-279 963.8 799 65.6
HanXRQChr12g0363561 Helianthus annuus HOM05D006947 ORTHO05D008818 1.7e-277 959.5 800 65.6
Lj6A742T64 Lonicera japonica HOM05D006947 ORTHO05D008818 2.4e-276 955.7 800 64.9
MSTRG.907 Avicennia marina HOM05D006947 ORTHO05D008818 1.3e-274 949.9 798 64.7
Potri.008G131900 Populus trichocarpa HOM05D006947 ORTHO05D008818 1.9e-273 946.0 861 60.3
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 1.6e-272 943.0 867 60.1
Eucgr.B02936 Eucalyptus grandis HOM05D006947 ORTHO05D008818 1.6e-272 943.0 801 63.7
MD16G1022800 Malus domestica HOM05D006947 ORTHO05D008818 2.1e-272 942.6 805 63.5
Potri.010G110200 Populus trichocarpa HOM05D006947 ORTHO05D008818 4.8e-272 941.4 802 63.3
Gohir.D01G143300 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.8e-271 939.5 752 65.8
RcHm_v2.0_Chr4g0443581 Rosa chinensis HOM05D006947 ORTHO05D008818 5.3e-271 937.9 798 63.3
FAN07G0937 Fragaria x ananassa HOM05D006947 ORTHO05D008818 2.9e-269 932.2 781 64.4
Duzib251G0407 Durio zibethinus HOM05D006947 ORTHO05D008818 4.9e-269 931.4 870 59.1
ECA233G0254 Erigeron canadensis HOM05D006947 ORTHO05D008818 8.7e-266 920.6 759 64.8
FAN12G3265 Fragaria x ananassa HOM05D006947 ORTHO05D008818 9.6e-265 917.1 826 60.9
Sabra10G0080600 Salix brachista HOM05D006947 ORTHO05D008818 1.8e-263 912.9 768 63.3
Lalb_Chr10g0096001 Lupinus albus HOM05D006947 ORTHO05D008818 4.9e-261 904.8 780 61.4
Atru.chr11.650 Acer truncatum HOM05D006947 ORTHO05D008818 8.4e-261 904.0 778 62.0
PGR102G1367 Punica granatum HOM05D006947 ORTHO05D008818 2.4e-260 902.5 866 57.3
QL03p033900 Quercus lobata HOM05D006947 ORTHO05D008818 3.2e-260 902.1 797 61.0
MELO3C005295.2 Cucumis melo HOM05D006947 ORTHO05D008818 9.3e-260 900.6 793 61.0
ClCG01G006350 Citrullus lanatus HOM05D006947 ORTHO05D008818 1.2e-259 900.2 798 60.0
Sed0026926 Sechium edule HOM05D006947 ORTHO05D008818 1.1e-257 893.6 813 58.4
CsaV3_5G028330 Cucumis sativus L. HOM05D006947 ORTHO05D008818 4.3e-257 891.7 813 59.2
Gohir.1Z015600 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.6e-256 889.8 841 59.8
Glyma.09G120400 Glycine max HOM05D006947 ORTHO05D008818 6.2e-256 887.9 796 59.9
AUR62014176 Chenopodium quinoa HOM05D006947 ORTHO05D008818 1.4e-255 886.7 774 59.8
Sc14g0006260 Simmondsia chinensis HOM05D006947 ORTHO05D008818 1.4e-255 886.7 792 60.7
EL10Ac6g14173 Beta vulgaris HOM05D006947 ORTHO05D008818 5.3e-255 884.8 779 59.3
THA.LOC104822169 Tarenaya hassleriana HOM05D006947 ORTHO05D008818 5.8e-254 881.3 831 58.7
Sc14g0007020 Simmondsia chinensis HOM05D006947 ORTHO05D008818 6.5e-253 877.9 792 60.5
Migut.L00588 Erythranthe guttata HOM05D006947 ORTHO05D008818 9.3e-252 874.0 818 59.5
Lsat_1_v5_gn_8_44260 Lactuca sativa HOM05D006947 ORTHO05D008818 1.0e-250 870.5 846 56.6
Rhsim09G0093800 Rhododendron simsii HOM05D006947 ORTHO05D008818 3.0e-250 869.0 891 57.5
Sp1g20640 Schrenkiella parvula HOM05D006947 ORTHO05D008818 2.5e-249 865.9 846 57.1
AUR62039529 Chenopodium quinoa HOM05D006947 ORTHO05D008818 3.3e-249 865.5 780 58.5
CARHR023620 Cardamine hirsuta HOM05D006947 ORTHO05D008818 5.7e-249 864.8 775 60.3
Actinidia36648 Actinidia chinensis HOM05D006947 ORTHO05D008818 1.3e-248 863.6 867 57.8
Thhalv10006791m.g Eutrema salsugineum HOM05D006947 ORTHO05D008818 2.8e-248 862.4 776 59.8
AL1G36850 Arabidopsis lyrata HOM05D006947 ORTHO05D008818 1.4e-247 860.1 813 58.2
BraA08t34762Z Brassica rapa HOM05D006947 ORTHO05D008818 1.4e-247 860.1 856 56.1
AT1G23180 Arabidopsis thaliana HOM05D006947 ORTHO05D008818 1.8e-247 859.8 775 59.7
C08p21780 Brassica napus HOM05D006947 ORTHO05D008818 2.4e-247 859.4 817 57.9
BcaB03g11927 Brassica carinata HOM05D006947 ORTHO05D008818 4.1e-247 858.6 815 57.9
BolC8t49817H Brassica oleracea HOM05D006947 ORTHO05D008818 4.1e-247 858.6 816 57.6
FvH4_4g34070 Fragaria vesca HOM05D006947 ORTHO05D008818 4.1e-247 858.6 719 64.3
Phvul.003G022200 Phaseolus vulgaris HOM05D006947 ORTHO05D008818 4.1e-247 858.6 795 58.4
BcaC07g39188 Brassica carinata HOM05D006947 ORTHO05D008818 5.3e-247 858.2 816 57.5
Aa31LG7G7190 Aethionema arabicum HOM05D006947 ORTHO05D008818 1.0e-245 854.0 782 59.3
Ah.03g137350 Amaranthus hybridus HOM05D006947 ORTHO05D008818 2.9e-245 852.4 844 55.2
CANSAT01G1138 Cannabis sativa HOM05D006947 ORTHO05D008818 6.5e-245 851.3 862 55.3
A08p28310 Brassica napus HOM05D006947 ORTHO05D008818 1.9e-244 849.7 858 55.8
Ca_12591_v3 Cicer arietinum L. HOM05D006947 ORTHO05D008818 1.9e-244 849.7 835 56.2
Carub.0001s2275 Capsella rubella HOM05D006947 ORTHO05D008818 1.5e-241 840.1 775 59.0
arahy.Tifrunner.gnm1.ann1.8B134P Arachis hypogaea HOM05D006947 ORTHO05D008818 7.4e-241 837.8 796 57.9
arahy.Tifrunner.gnm1.ann1.573L1D Arachis hypogaea HOM05D006947 ORTHO05D008818 9.7e-241 837.4 756 59.7
VMungo1215G1110 Vigna mungo HOM05D006947 ORTHO05D008818 2.4e-239 832.8 795 57.1
Hund24964 Selenicereus undatus HOM05D006947 ORTHO05D008818 5.9e-238 828.2 904 52.5
Gohir.A01G150136 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.7e-237 826.6 840 56.9
Aqoxy3G04093 Aquilegia oxysepala HOM05D006947 ORTHO05D008818 5.5e-236 821.6 767 59.1
ATR0317G087 Amborella trichopoda HOM05D006947 ORTHO05D008818 5.1e-234 815.1 815 55.5
TPR.G36974 Trifolium pratense HOM05D006947 ORTHO05D008818 5.3e-231 805.1 828 54.1
Medtr1g031750 Medicago truncatula HOM05D006947 ORTHO05D008818 1.3e-229 800.4 765 57.0
unitig_52.g17412 Utricularia gibba HOM05D006947 ORTHO05D008818 4.0e-218 762.3 736 55.6
MBI15_g36991_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 1.5e-217 760.4 713 57.8
Thecc.02G287500 Theobroma cacao HOM05D006947 ORTHO05D008818 3.6e-211 739.2 691 58.6
HPP92_024592 Vanilla planifolia HOM05D006947 ORTHO05D008818 1.2e-206 724.2 802 50.7
Os01g0524700 Oryza sativa ssp. japonica HOM05D006947 ORTHO05D008818 2.3e-197 693.3 791 47.5
vmacro10663 Vaccinium macrocarpon HOM05D006947 ORTHO05D008818 3.7e-192 676.0 858 49.3
Nitab4.5_0000018g0180 Nicotiana tabacum HOM05D006947 ORTHO05D008818 5.4e-191 672.2 585 63.4
CDE11G0632 Ceratophyllum demersum HOM05D006947 ORTHO05D008818 1.6e-190 670.6 803 48.1
SalBow8G5231 Salvia bowleyana HOM05D006947 ORTHO05D008818 4.6e-190 669.1 586 61.4
Hma1.2p1_0330F.1_g127410 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 1.1e-188 664.5 490 69.6
HPP92_024520 Vanilla planifolia HOM05D006947 ORTHO05D008818 6.6e-181 638.6 802 46.6
Prupe.1G330100 Prunus persica HOM05D006947 ORTHO05D008818 1.2e-179 634.4 562 61.0
Migut.O00818 Erythranthe guttata HOM05D006947 ORTHO05D008818 2.5e-172 610.1 589 58.6
MBI15_g41220_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 4.3e-172 609.4 717 49.5
Psat6g044440 Pisum sativum HOM05D006947 ORTHO05D008818 6.4e-168 595.5 561 56.0
Lj2g0020590 Lotus japonicus HOM05D006947 ORTHO05D008818 1.3e-165 587.8 598 54.5
Glyma.07G166300 Glycine max HOM05D006947 ORTHO05D008818 3.1e-162 576.6 463 63.5
Cpa.g.sc2.239 Carica papaya HOM05D006947 ORTHO05D008818 6.9e-154 548.9 632 51.6
PSO782G4825 Papaver somniferum HOM05D006947 ORTHO05D008818 2.2e-152 543.9 522 55.6
PSO063G5930 Papaver somniferum HOM05D006947 ORTHO05D008818 4.3e-148 529.6 476 58.8
Oeu023430.2 Olea europaea HOM05D006947 ORTHO05D008818 8.1e-147 525.4 860 43.0
Pp3c18_19500 Physcomitrium patens HOM05D006947 ORTHO05D008818 1.5e-116 424.9 835 34.4
Nn4g24252 Nelumbo nucifera HOM05D006947 ORTHO05D008818 1.2e-102 378.6 832 34.6
Hma1.2p1_0330F.1_g127420 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 4.0e-101 373.6 282 70.2
Nitab4.5_0000532g0040 Nicotiana tabacum HOM05D006947 ORTHO05D008818 3.5e-89 334.0 305 61.6
AagrBONN_evm.TU.Sc2ySwM_117.3643 Anthoceros agrestis HOM05D006947 ORTHO05D008818 3.4e-84 317.4 375 46.1
SalBow8G4359 Salvia bowleyana HOM05D006947 ORTHO05D008818 9.2e-82 309.3 278 59.4
Cpa.g.sc1084.1 Carica papaya HOM05D006947 ORTHO05D008818 8.9e-77 292.7 267 59.9
Nitab4.5_0000532g0050 Nicotiana tabacum HOM05D006947 ORTHO05D008818 7.5e-76 289.7 263 60.8
PGSC0003DMG400015903 Solanum tuberosum HOM05D006947 ORTHO05D008818 1.7e-75 288.5 206 71.4
Mapoly0112s0009 Marchantia polymorpha HOM05D006947 ORTHO05D008818 1.3e-72 278.9 623 31.6
MD13G1021800 Malus domestica HOM05D006947 ORTHO05D008818 5.2e-61 240.4 794 28.0
CBR_g50426 Chara braunii HOM05D006947 ORTHO05D008818 9.2e-58 229.6 854 26.7
GSVIVG01031683001 Vitis vinifera HOM05D006947 ORTHO05D005406 8.2e-22 110.2 151 45.7
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 1.4e-21 109.4 144 43.8
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 2.5e-15 88.6 157 39.5
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 3.3e-15 88.2 110 44.5
Oeu059516.1 Olea europaea HOM05D001630 ORTHO05D002505 2.2e-14 85.5 68 60.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 7.7e-12 77.0 114 41.2
Lsat_1_v5_gn_4_154640 Lactuca sativa HOM05D001865 ORTHO05D001815 6.1e-09 67.4 191 29.3
DCAR_025873 Daucus carota HOM05D001865 ORTHO05D001815 5.7e-07 60.8 189 31.7
HanXRQChr11g0324271 Helianthus annuus HOM05D001865 ORTHO05D001815 7.4e-07 60.5 220 27.3
Lsat_1_v5_gn_3_81460 Lactuca sativa HOM05D001865 ORTHO05D001815 7.4e-07 60.5 197 28.4
CiPaw.04G046200 Carya illinoinensis HOM05D001865 ORTHO05D001815 9.7e-07 60.1 175 32.0
Migut.L00465 Erythranthe guttata HOM05D001865 ORTHO05D001815 9.7e-07 60.1 135 36.3
CANSAT01G0385 Cannabis sativa HOM05D000215 ORTHO05D003454 2.8e-06 58.5 159 28.9
Lsat_1_v5_gn_9_45700 Lactuca sativa HOM05D000716 ORTHO05D002658 2.8e-06 58.5 183 25.7
AUR62030985 Chenopodium quinoa HOM05D000215 ORTHO05D003454 3.7e-06 58.2 187 27.3
MD06G1007200 Malus domestica HOM05D000716 ORTHO05D002658 3.7e-06 58.2 161 25.5
AUR62035142 Chenopodium quinoa HOM05D000716 ORTHO05D002658 4.8e-06 57.8 179 21.8


User provided reference genes

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