Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 3181.3 1650 100.0
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2556.2 1602 79.8
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2503.0 1607 78.8
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2488.4 1600 78.7
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2484.5 1602 77.0
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2483.0 1603 76.9
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2470.7 1604 76.0
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2468.0 1603 78.0
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2466.0 1605 76.6
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2466.0 1587 77.9
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2465.3 1600 77.9
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2462.6 1599 76.9
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2458.7 1666 74.7
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2450.6 1603 75.5
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2442.5 1624 75.9
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2442.5 1605 75.2
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2436.4 1604 75.6
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2435.6 1605 75.8
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2420.2 1602 75.0
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2420.2 1606 75.5
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2410.9 1615 74.4
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2410.2 1605 74.4
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2407.5 1613 74.3
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2396.3 1605 74.1
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2394.4 1606 74.1
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2391.7 1504 79.6
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2387.8 1603 74.2
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2378.6 1604 73.7
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2374.0 1611 73.6
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2364.7 1604 73.2
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2357.0 1601 75.0
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2356.6 1606 73.0
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2355.9 1586 74.3
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2336.6 1605 72.8
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2336.2 1601 72.7
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2335.5 1605 73.3
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2334.3 1609 72.0
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2333.9 1605 72.8
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2329.3 1606 72.5
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2327.0 1630 71.8
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2322.4 1609 72.0
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2319.7 1509 76.5
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2312.7 1628 70.8
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2308.9 1601 72.2
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2307.7 1549 76.3
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2299.6 1606 72.0
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2296.2 1606 71.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2295.0 1616 71.4
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2293.1 1605 71.7
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2270.4 1598 70.7
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2265.7 1614 70.9
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2265.7 1914 62.3
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2263.8 1598 70.2
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2259.2 1602 70.0
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2257.3 1598 71.3
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2245.7 1612 69.8
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2241.5 1613 69.7
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2235.3 1618 70.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2233.8 1625 69.9
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2232.6 1617 69.9
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2223.7 1617 69.4
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2223.7 1641 69.5
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2213.3 1620 69.1
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2211.0 1450 75.7
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2210.6 1612 69.4
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2195.2 1502 72.6
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2194.5 1605 69.3
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2191.4 1610 68.7
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2185.2 1606 68.7
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2183.3 1599 68.9
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2182.5 1606 68.7
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2181.4 1595 68.3
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2174.1 1607 68.4
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2159.0 1606 68.1
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2156.3 1418 74.8
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2152.1 1610 67.6
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2150.2 1632 68.6
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2146.3 1608 67.8
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2144.4 1607 67.6
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2140.5 1608 67.5
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2134.0 1608 67.5
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2087.4 1607 66.0
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2085.1 1942 57.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2057.7 1604 65.6
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2051.6 1424 73.5
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2028.4 1389 73.4
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2020.0 1614 64.7
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2019.2 1606 64.4
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2016.1 1481 68.4
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1957.6 1605 63.8
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1953.3 1607 63.2
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1929.5 1587 62.5
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1905.6 1201 78.4
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1803.9 1572 62.7
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1755.3 1417 65.9
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1744.9 1232 72.4
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1703.3 1098 76.9
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1627.5 974 82.5
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1587.8 1372 62.3
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1582.8 966 81.5
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1428.3 1622 48.9
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1406.0 1201 58.5
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1389.4 1624 47.3
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1321.6 1591 46.0
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1284.6 1078 62.3
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1219.9 1618 46.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1172.9 732 79.2
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 6.8e-275 951.8 650 72.5
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.4e-259 900.2 622 73.3
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-250 869.8 606 73.4
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.4e-249 865.1 590 74.9
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 2.4e-243 847.0 605 70.9
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 7.1e-240 835.5 587 71.6
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.1e-231 805.8 501 79.8
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 2.3e-230 803.9 534 75.7
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 5.0e-225 786.2 649 63.3
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.9e-209 733.8 522 71.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 6.3e-196 689.5 511 69.9
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 8.6e-185 652.5 499 67.3
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 5.5e-184 649.8 645 54.1
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.0e-182 645.6 553 63.8
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 4.4e-173 613.6 509 64.2
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 3.0e-169 600.9 463 66.1
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 3.4e-165 587.4 403 73.0
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 2.5e-152 544.7 333 78.4
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 6.6e-145 520.0 486 53.7
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 2.5e-144 518.1 360 72.2
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 3.6e-135 487.6 325 75.4
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.4e-134 485.0 324 75.9
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 6.5e-124 450.3 290 80.3
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.6e-122 445.7 318 71.1
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.2e-119 433.3 316 70.6
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.0e-113 414.8 368 58.2
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 8.2e-111 406.8 397 54.4
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.5e-107 395.2 246 76.4
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.0e-105 388.3 405 51.9
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.9e-83 315.8 247 61.1
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 3.0e-73 282.0 211 67.3
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 4.4e-72 278.1 161 83.9
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 2.0e-69 269.2 161 83.2
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.2e-61 243.4 142 81.0
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 2.3e-57 229.2 142 78.9
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 2.5e-51 209.1 146 67.1
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.6e-50 206.5 211 54.0
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.3e-44 186.8 118 78.0
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 5.6e-43 181.4 129 69.8
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.4e-38 166.8 142 62.0
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 2.1e-37 162.9 102 79.4
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.6e-36 157.9 100 76.0
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.6e-36 157.5 143 58.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 143 58.7
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 143 58.7
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 143 58.7
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 143 58.7
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 143 58.7
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.5e-35 156.8 143 58.0
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 7.3e-35 154.5 93 80.6
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.1e-34 152.9 143 57.3
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 8.1e-34 151.0 100 70.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.6e-28 131.3 130 54.6
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-27 130.6 130 54.6
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.5e-27 129.4 91 72.5
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.5e-24 120.2 84 66.7
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.6e-24 119.4 115 57.4
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.3e-20 106.3 88 58.0
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 3.9e-20 105.5 88 56.8
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 6.9e-17 94.7 82 62.2
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.4e-14 86.3 74 54.1
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 5.5e-14 85.1 49 77.6
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.6e-13 83.6 55 72.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.1e-13 83.2 56 71.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 9.6e-11 74.3 54 64.8
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 2.8e-10 72.8 54 64.8
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 4.8e-10 72.0 148 36.5
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.1e-09 70.9 51 64.7
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 4.9e-07 62.0 40 67.5


User provided reference genes

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