Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 7.4e-254 880.2 482 100.0
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.6e-171 606.7 480 67.7
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 1.2e-163 580.5 482 64.3
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.7e-162 576.6 480 65.0
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.7e-162 576.6 480 65.0
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 5.6e-161 571.6 491 64.2
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 2.0e-158 563.1 486 63.2
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 2.9e-157 559.3 476 62.4
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.2e-155 553.9 495 62.0
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 6.0e-155 551.6 491 64.0
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.3e-154 550.4 482 63.5
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 5.1e-154 548.5 482 65.4
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 6.6e-154 548.1 482 63.3
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.1e-153 547.4 483 64.0
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 1.9e-153 546.6 486 62.6
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 8.1e-152 541.2 479 61.0
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 2.4e-151 539.7 482 62.0
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 2.4e-151 539.7 521 58.9
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 9.9e-150 534.3 482 62.4
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 9.9e-150 534.3 481 62.2
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 1.7e-149 533.5 483 63.8
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 2.9e-149 532.7 489 61.6
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 8.4e-149 531.2 482 60.2
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 2.4e-148 529.6 500 62.2
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 5.4e-148 528.5 486 61.1
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 9.3e-148 527.7 481 63.2
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 2.1e-147 526.6 483 60.2
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 1.8e-146 523.5 487 60.2
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.5e-145 520.4 483 59.6
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.5e-145 520.4 469 60.8
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.9e-145 520.0 493 57.8
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 3.3e-145 519.2 492 62.6
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 7.4e-145 518.1 487 58.5
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.3e-144 517.3 476 59.9
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 3.7e-144 515.8 488 59.6
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 3.7e-144 515.8 484 57.4
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 8.1e-144 514.6 485 60.4
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 8.1e-144 514.6 485 57.7
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.8e-143 513.5 491 60.9
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 6.9e-143 511.5 512 57.2
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.2e-142 510.8 488 58.0
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.5e-142 510.4 485 58.4
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 2.0e-142 510.0 492 57.1
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 3.4e-142 509.2 520 56.7
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 3.4e-142 509.2 482 56.4
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 9.9e-142 507.7 481 59.9
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 2.2e-141 506.5 480 59.8
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 3.8e-141 505.8 487 60.2
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 4.9e-141 505.4 488 60.0
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 1.1e-140 504.2 490 59.2
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 3.2e-140 502.7 506 55.5
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 3.2e-140 502.7 491 57.2
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.2e-140 502.7 491 57.6
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.6e-139 500.4 489 58.3
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 3.5e-139 499.2 480 59.0
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 6.0e-139 498.4 476 59.2
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.8e-138 496.9 490 56.3
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.3e-138 496.5 478 59.0
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.3e-138 496.5 486 57.6
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.3e-137 492.7 477 58.5
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 3.7e-136 489.2 491 56.4
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 4.0e-135 485.7 489 57.1
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 2.0e-134 483.4 485 59.0
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.0e-134 483.4 481 59.7
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.6e-134 483.0 484 57.4
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.6e-134 483.0 471 58.0
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 3.4e-134 482.6 486 55.6
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 4.5e-134 482.3 484 56.4
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 4.5e-134 482.3 485 59.6
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 5.8e-134 481.9 477 59.1
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.0e-133 481.1 492 55.3
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.3e-133 480.7 488 54.7
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.7e-133 480.3 491 58.7
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.2e-133 479.9 488 55.9
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.2e-133 479.9 479 57.6
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 2.9e-133 479.6 474 57.8
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 3.8e-133 479.2 487 56.1
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 4.9e-133 478.8 474 57.8
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 6.5e-133 478.4 478 59.4
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.5e-131 472.6 494 54.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 6.1e-131 471.9 487 57.3
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.0e-130 471.1 492 54.3
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 8.7e-130 468.0 505 53.5
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.1e-129 467.6 422 65.2
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.1e-129 467.6 483 56.1
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 3.3e-129 466.1 477 56.6
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 3.3e-129 466.1 390 60.8
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 4.3e-129 465.7 483 55.9
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 5.7e-129 465.3 473 56.0
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 6.3e-128 461.8 483 54.9
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.4e-127 460.7 488 54.9
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 9.0e-127 458.0 484 52.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.5e-126 457.2 480 54.6
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 2.2e-125 453.4 484 52.1
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.2e-123 447.6 380 61.3
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 2.3e-114 416.8 430 56.7
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 6.7e-114 415.2 403 57.1
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.6e-110 403.3 487 49.5
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 4.5e-110 402.5 415 54.7
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.5e-108 396.7 482 50.8
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 7.4e-105 385.2 413 54.5
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.8e-103 380.6 426 53.1
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.0e-98 364.8 505 45.9
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 2.4e-95 353.6 385 53.5
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.7e-93 347.4 313 57.2
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 7.0e-87 325.5 490 42.4
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 9.1e-87 325.1 311 56.6
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.0e-85 321.6 307 58.3
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 3.7e-80 303.1 403 45.7
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.4e-79 301.2 489 42.1
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.6e-78 297.7 197 79.2
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.7e-72 276.6 317 49.8
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.6e-70 271.2 479 40.9
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.9e-68 264.2 229 65.5
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.2e-59 235.0 227 59.9
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 2.8e-59 233.8 243 54.7
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 5.2e-58 229.6 228 53.9
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 2.6e-57 227.3 317 42.0
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 4.9e-48 196.4 332 38.0
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 2.3e-45 187.6 235 44.7
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.3e-43 181.8 326 39.9
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.6e-38 163.3 151 60.9
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 6.0e-38 162.9 294 40.1
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 1.2e-30 138.7 185 47.0
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 3.0e-29 134.0 111 55.9
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.7e-24 118.2 135 45.2
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 8.4e-24 115.9 178 45.5
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.1e-20 105.5 94 53.2
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 1.8e-18 98.2 262 28.6
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 7.2e-15 86.3 74 62.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.6e-09 67.8 115 38.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 8.5e-08 62.8 165 32.7
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.1e-07 62.4 112 35.7
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.4e-07 62.0 152 30.9
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.9e-07 61.6 161 29.2
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.5e-07 61.2 125 34.4
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 3.2e-07 60.8 83 38.6
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.2e-07 60.5 116 34.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.5e-07 60.1 153 31.4
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 7.2e-07 59.7 118 31.4
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 9.4e-07 59.3 87 32.2
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 1.2e-06 58.9 81 34.6
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.6e-06 58.5 125 33.6
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 1.6e-06 58.5 87 36.8
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.6e-06 58.5 134 32.1
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.6e-06 58.5 141 31.2
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.1e-06 58.2 140 32.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.1e-06 58.2 135 33.3
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.6e-06 57.4 127 31.5
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 4.6e-06 57.0 114 34.2
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 4.6e-06 57.0 158 31.0
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 4.6e-06 57.0 120 32.5
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 6.1e-06 56.6 141 31.9
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 6.1e-06 56.6 117 35.0
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 6.1e-06 56.6 114 31.6
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 6.1e-06 56.6 118 32.2
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 6.1e-06 56.6 125 33.6
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 7.9e-06 56.2 197 28.4
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 7.9e-06 56.2 197 28.4
CBR_g685 Chara braunii HOM05D002747 ORTHO05D003069 7.9e-06 56.2 74 35.1
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 7.9e-06 56.2 121 31.4
RcHm_v2.0_Chr6g0284441 Rosa chinensis HOM05D002747 ORTHO05D003069 7.9e-06 56.2 64 37.5


User provided reference genes

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