Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.0e-37 159.5 75 100.0
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 6.3e-35 150.2 75 94.7
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 8.2e-35 149.8 75 94.7
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.0e-33 145.2 75 89.3
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 2.6e-28 128.3 71 83.1
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-24 115.9 59 91.5
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.0e-24 114.0 71 71.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 5.0e-24 114.0 71 70.4
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 5.0e-24 114.0 71 71.8
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 8.5e-24 113.2 71 70.4
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.9e-23 112.1 71 69.0
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.9e-23 112.1 71 70.4
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.9e-23 112.1 71 71.8
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.9e-23 112.1 71 71.8
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.5e-23 111.7 71 69.0
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 2.5e-23 111.7 71 69.0
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 2.5e-23 111.7 71 70.4
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 5.5e-23 110.5 71 70.4
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 5.5e-23 110.5 71 70.4
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 5.5e-23 110.5 71 70.4
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 9.4e-23 109.8 71 69.0
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.2e-22 109.4 71 69.0
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 1.2e-22 109.4 71 69.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.2e-22 109.4 71 69.0
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.2e-22 109.4 71 69.0
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.2e-22 109.4 71 69.0
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.2e-22 109.4 71 69.0
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.6e-22 109.0 71 67.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.6e-22 109.0 71 69.0
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.1e-22 108.6 71 67.6
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 2.1e-22 108.6 71 69.0
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.1e-22 108.6 71 69.0
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.1e-22 108.6 71 70.4
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.1e-22 108.6 71 70.4
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.1e-22 108.6 71 67.6
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 69.0
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 70.4
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 67.6
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 67.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 2.7e-22 108.2 70 67.1
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 2.7e-22 108.2 70 67.1
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 67.6
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 64.8
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 66.2
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.7e-22 108.2 71 66.2
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 3.6e-22 107.8 71 67.6
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 4.7e-22 107.5 71 66.2
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 4.7e-22 107.5 71 70.4
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 4.7e-22 107.5 71 67.6
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 4.7e-22 107.5 71 66.2
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.1e-22 107.1 71 64.8
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 6.1e-22 107.1 71 70.4
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 8.0e-22 106.7 63 74.6
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 8.0e-22 106.7 71 66.2
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 8.0e-22 106.7 71 67.6
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.0e-21 106.3 71 67.6
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.0e-21 106.3 71 67.6
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.0e-21 106.3 71 67.6
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.4e-21 105.9 71 66.2
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.4e-21 105.9 71 69.0
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.4e-21 105.9 71 67.6
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.4e-21 105.9 71 69.0
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.8e-21 105.5 71 64.8
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.8e-21 105.5 66 74.2
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.8e-21 105.5 71 64.8
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.8e-21 105.5 71 67.6
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.0e-21 104.8 71 64.8
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.0e-21 104.8 71 67.6
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.0e-21 104.8 71 66.2
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 3.0e-21 104.8 71 66.2
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 3.0e-21 104.8 63 77.8
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.0e-21 104.8 71 67.6
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.0e-21 104.8 69 71.0
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 3.9e-21 104.4 71 69.0
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.9e-21 104.4 71 66.2
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.9e-21 104.4 71 66.2
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 5.2e-21 104.0 64 73.4
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.2e-21 104.0 71 66.2
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 6.7e-21 103.6 71 66.2
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.7e-21 103.6 71 66.2
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.7e-21 103.6 71 66.2
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 8.8e-21 103.2 63 74.6
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 8.8e-21 103.2 63 74.6
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 8.8e-21 103.2 71 66.2
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 8.8e-21 103.2 71 67.6
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 8.8e-21 103.2 72 68.1
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.1e-20 102.8 71 66.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.1e-20 102.8 71 64.8
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.5e-20 102.4 66 71.2
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.5e-20 102.4 71 64.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.5e-20 102.4 71 64.8
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 2.0e-20 102.1 71 66.2
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.0e-20 102.1 71 66.2
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.0e-20 102.1 71 66.2
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 2.6e-20 101.7 71 64.8
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 2.6e-20 101.7 71 66.2
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.6e-20 101.7 70 62.9
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 3.3e-20 101.3 71 62.0
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 4.4e-20 100.9 71 64.8
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 4.4e-20 100.9 71 66.2
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.4e-20 100.9 71 62.0
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 4.4e-20 100.9 71 64.8
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.7e-20 100.5 71 66.2
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.7e-20 100.5 71 66.2
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.7e-20 100.5 71 66.2
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 5.7e-20 100.5 71 62.0
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 7.4e-20 100.1 71 63.4
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 9.7e-20 99.8 71 64.8
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.3e-19 99.4 71 63.4
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 1.3e-19 99.4 71 60.6
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.7e-19 99.0 71 62.0
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.2e-19 98.6 71 62.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 2.8e-19 98.2 71 64.8
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 2.8e-19 98.2 71 64.8
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 6.3e-19 97.1 71 63.4
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.8e-18 95.5 71 60.6
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.4e-18 95.1 71 60.6
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.4e-18 95.1 71 60.6
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.1e-18 94.7 71 60.6
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 4.1e-18 94.4 57 71.9
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 7.0e-18 93.6 71 59.2
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 7.0e-18 93.6 71 59.2
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 7.7e-17 90.1 62 67.7
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.3e-16 89.4 71 59.2
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.2e-16 88.6 62 67.7
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.2e-16 88.6 71 47.9
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.2e-16 88.6 93 48.4
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.9e-16 88.2 71 59.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 6.5e-16 87.0 55 72.7
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 6.5e-16 87.0 62 67.7
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 8.5e-16 86.7 71 56.3
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 1.1e-15 86.3 71 57.7
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.5e-15 85.9 64 64.1
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 3.2e-15 84.7 63 61.9
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 4.2e-15 84.3 60 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 9.4e-15 83.2 70 55.7
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 3.6e-14 81.3 63 60.3
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.6e-14 81.3 63 60.3
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 8.0e-14 80.1 63 57.1
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 8.0e-14 80.1 63 57.1
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.0e-13 77.8 63 58.7
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 4.0e-13 77.8 63 58.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 4.1e-10 67.8 41 75.6
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 4.7e-06 54.3 37 62.2


User provided reference genes

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