Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g07360 Coffea canephora HOM05D006088 ORTHO05D007281 1.2e-111 406.4 192 100.0
Cc00_g34690 Coffea canephora HOM05D006088 ORTHO05D007281 3.4e-61 238.8 122 95.1
Dinv29251 Davidia involucrata HOM05D006088 ORTHO05D007281 9.4e-59 230.7 164 69.5
CSS0005298 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 1.3e-55 220.3 160 69.4
CSS0044490 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 1.3e-55 220.3 160 69.4
vmacro06404 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 1.3e-55 220.3 160 70.0
Rhsim03G0211500 Rhododendron simsii HOM05D006088 ORTHO05D007281 2.8e-55 219.2 160 70.0
Actinidia34240 Actinidia chinensis HOM05D006088 ORTHO05D007281 8.2e-55 217.6 156 67.9
vmacro06403 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 2.4e-54 216.1 161 68.3
GSVIVG01038590001 Vitis vinifera HOM05D006088 ORTHO05D007281 3.1e-54 215.7 164 65.2
PGSC0003DMG400018542 Solanum tuberosum HOM05D006088 ORTHO05D007281 1.5e-53 213.4 159 66.7
Potri.015G009500 Populus trichocarpa HOM05D006088 ORTHO05D007281 2.6e-53 212.6 158 65.8
Sopen03g022590 Solanum pennellii HOM05D006088 ORTHO05D007281 4.5e-53 211.8 161 66.5
Nitab4.5_0005326g0020 Nicotiana tabacum HOM05D006088 ORTHO05D007281 2.2e-52 209.5 159 66.7
Sabra15G0007500 Salix brachista HOM05D006088 ORTHO05D007281 2.2e-52 209.5 158 63.9
Peaxi162Scf00740g00327 Petunia axillaris HOM05D006088 ORTHO05D007281 2.9e-52 209.1 156 66.0
QL09p007776 Quercus lobata HOM05D006088 ORTHO05D007281 2.9e-52 209.1 195 57.4
TAR629G2736 Trochodendron aralioides HOM05D006088 ORTHO05D007281 2.9e-52 209.1 167 61.7
Ciclev10020182m.g Citrus clementina HOM05D006088 ORTHO05D007281 5.0e-52 208.4 163 63.8
Hma1.2p1_0707F.1_g207060 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 5.0e-52 208.4 189 57.7
Hma1.2p1_0707F.1_g207070 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 5.0e-52 208.4 189 57.7
Lj1A1022T49 Lonicera japonica HOM05D006088 ORTHO05D007281 5.0e-52 208.4 163 64.4
Solyc03g082850.3 Solanum lycopersicum HOM05D006088 ORTHO05D007281 5.0e-52 208.4 161 65.8
Atru.chr12.2268 Acer truncatum HOM05D006088 ORTHO05D007281 1.4e-51 206.8 160 64.4
Atru.chr12.2276 Acer truncatum HOM05D006088 ORTHO05D007281 1.4e-51 206.8 160 64.4
Nn1g00333 Nelumbo nucifera HOM05D006088 ORTHO05D007281 5.5e-51 204.9 188 56.4
RcHm_v2.0_Chr1g0381781 Rosa chinensis HOM05D006088 ORTHO05D007281 5.5e-51 204.9 185 58.4
SGA_v2.0_scaffold44G16827 Striga asiatica HOM05D006088 ORTHO05D007281 5.5e-51 204.9 160 63.8
MSTRG.27009 Avicennia marina HOM05D006088 ORTHO05D007281 7.2e-51 204.5 156 64.7
Migut.F00188 Erythranthe guttata HOM05D006088 ORTHO05D007281 7.2e-51 204.5 160 63.1
Prupe.2G314700 Prunus persica HOM05D006088 ORTHO05D007281 7.2e-51 204.5 159 63.5
FvH4_7g32160 Fragaria vesca HOM05D006088 ORTHO05D007281 1.2e-50 203.8 185 56.2
FAN06G1538 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.2e-50 203.8 185 56.2
COL.COLO4_16809 Corchorus olitorius HOM05D006088 ORTHO05D007281 1.6e-50 203.4 159 62.3
Oeu037044.1 Olea europaea HOM05D006088 ORTHO05D007281 1.6e-50 203.4 165 62.4
DCAR_014551 Daucus carota HOM05D006088 ORTHO05D007281 2.1e-50 203.0 156 64.7
Manes.01G039200 Manihot esculenta HOM05D006088 ORTHO05D007281 2.1e-50 203.0 161 64.0
Ca_12770_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 2.7e-50 202.6 185 57.3
Ca_12778_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 2.7e-50 202.6 185 57.3
FAN03G2371 Fragaria x ananassa HOM05D006088 ORTHO05D007281 2.7e-50 202.6 185 55.7
FAN03G2860 Fragaria x ananassa HOM05D006088 ORTHO05D007281 2.7e-50 202.6 185 55.7
FAN10G3213 Fragaria x ananassa HOM05D006088 ORTHO05D007281 2.7e-50 202.6 185 56.2
FAN10G3559 Fragaria x ananassa HOM05D006088 ORTHO05D007281 7.9e-50 201.1 185 55.7
FAN01G2391 Fragaria x ananassa HOM05D006088 ORTHO05D007281 6.7e-49 198.0 190 53.7
TPR.G24535 Trifolium pratense HOM05D006088 ORTHO05D007281 1.1e-48 197.2 156 62.8
Duzib068G0049 Durio zibethinus HOM05D006088 ORTHO05D007281 2.6e-48 196.1 163 59.5
Gorai.006G202600 Gossypium raimondii HOM05D006088 ORTHO05D007281 3.3e-48 195.7 163 57.7
CANSAT21G0843 Cannabis sativa HOM05D006088 ORTHO05D007281 4.4e-48 195.3 167 61.7
Gohir.A09G186501 Gossypium hirsutum HOM05D006088 ORTHO05D007281 9.7e-48 194.1 163 57.7
PGR042G2967 Punica granatum HOM05D006088 ORTHO05D007281 1.3e-47 193.7 163 59.5
THA.LOC104814937 Tarenaya hassleriana HOM05D006088 ORTHO05D007281 1.7e-47 193.4 157 61.1
AT5G24340 Arabidopsis thaliana HOM05D006088 ORTHO05D007281 2.2e-47 193.0 158 58.9
Psat6g035960 Pisum sativum HOM05D006088 ORTHO05D007281 2.2e-47 193.0 185 54.6
Thecc.03G202800 Theobroma cacao HOM05D006088 ORTHO05D007281 2.8e-47 192.6 163 57.7
TWI39G0339 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 3.7e-47 192.2 169 59.2
Cc02_g01220 Coffea canephora HOM05D006088 ORTHO05D007281 6.3e-47 191.4 161 61.5
Gohir.D09G180600 Gossypium hirsutum HOM05D006088 ORTHO05D007281 8.2e-47 191.0 161 57.8
MD07G1295100 Malus domestica HOM05D006088 ORTHO05D007281 1.4e-46 190.3 165 60.0
AL6G35860 Arabidopsis lyrata HOM05D006088 ORTHO05D007281 1.8e-46 189.9 161 57.8
Lsat_1_v5_gn_2_135240 Lactuca sativa HOM05D006088 ORTHO05D007281 1.8e-46 189.9 161 60.2
arahy.Tifrunner.gnm1.ann1.W8KES2 Arachis hypogaea HOM05D006088 ORTHO05D007281 7.0e-46 188.0 157 59.9
Eucgr.A01442 Eucalyptus grandis HOM05D006088 ORTHO05D007281 7.0e-46 188.0 185 52.4
CiPaw.06G044500 Carya illinoinensis HOM05D006088 ORTHO05D007281 9.1e-46 187.6 164 59.1
Lj5g0026434 Lotus japonicus HOM05D006088 ORTHO05D007281 9.1e-46 187.6 156 60.9
CAN.G481.44 Capsicum annuum HOM05D006088 ORTHO05D007281 1.5e-45 186.8 182 54.4
PSO063G3091 Papaver somniferum HOM05D006088 ORTHO05D007281 2.0e-45 186.4 163 57.7
EL10Ac3g05241 Beta vulgaris HOM05D006088 ORTHO05D007281 2.6e-45 186.0 173 54.9
arahy.Tifrunner.gnm1.ann1.F1TPPK Arachis hypogaea HOM05D006088 ORTHO05D007281 3.8e-44 182.2 157 59.2
Hund21022 Selenicereus undatus HOM05D006088 ORTHO05D007281 8.5e-44 181.0 172 52.3
MBI12_g21748_MAGBIO Magnolia biondii HOM05D006088 ORTHO05D007281 1.4e-43 180.3 168 55.4
Sp2g22980 Schrenkiella parvula HOM05D006088 ORTHO05D007281 1.4e-43 180.3 156 57.1
Carub.0006s2216 Capsella rubella HOM05D006088 ORTHO05D007281 2.5e-43 179.5 158 56.3
CARHR189110 Cardamine hirsuta HOM05D006088 ORTHO05D007281 3.2e-43 179.1 165 57.0
Thhalv10004042m.g Eutrema salsugineum HOM05D006088 ORTHO05D007281 1.6e-42 176.8 158 58.2
Aa31LG11G3620 Aethionema arabicum HOM05D006088 ORTHO05D007281 2.1e-42 176.4 166 55.4
AUR62006059 Chenopodium quinoa HOM05D006088 ORTHO05D007281 4.7e-42 175.3 209 45.5
C02p60380 Brassica napus HOM05D006088 ORTHO05D007281 3.9e-41 172.2 156 56.4
BcaB07g29905 Brassica carinata HOM05D006088 ORTHO05D007281 6.7e-41 171.4 156 55.8
CDE02G1851 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 6.7e-41 171.4 171 50.9
BraA02t09012Z Brassica rapa HOM05D006088 ORTHO05D007281 1.5e-40 170.2 156 55.8
Lalb_Chr04g0253281 Lupinus albus HOM05D006088 ORTHO05D007281 1.5e-40 170.2 157 57.3
BcaC03g17984 Brassica carinata HOM05D006088 ORTHO05D007281 2.0e-40 169.9 156 55.1
BcaC03g17985 Brassica carinata HOM05D006088 ORTHO05D007281 2.0e-40 169.9 156 55.1
BcaC03g17987 Brassica carinata HOM05D006088 ORTHO05D007281 2.0e-40 169.9 156 55.1
A02p40650 Brassica napus HOM05D006088 ORTHO05D007281 2.0e-40 169.9 156 55.8
BolC2t12093H Brassica oleracea HOM05D006088 ORTHO05D007281 4.4e-40 168.7 156 55.8
Aqoxy5G04265 Aquilegia oxysepala HOM05D006088 ORTHO05D007281 1.1e-38 164.1 177 46.9
MELO3C019378.2 Cucumis melo HOM05D006088 ORTHO05D007281 4.1e-38 162.2 164 54.9
Sed0011789 Sechium edule HOM05D006088 ORTHO05D007281 4.1e-38 162.2 188 48.9
HanXRQChr04g0100451 Helianthus annuus HOM05D006088 ORTHO05D007281 1.6e-37 160.2 159 53.5
CsaV3_3G019690 Cucumis sativus L. HOM05D006088 ORTHO05D007281 3.5e-37 159.1 179 52.0
Sc25g0000960 Simmondsia chinensis HOM05D006088 ORTHO05D007281 8.5e-36 154.5 170 51.2
Glyma.13G078800 Glycine max HOM05D006088 ORTHO05D007281 1.9e-35 153.3 161 54.0
HPP92_025612 Vanilla planifolia HOM05D006088 ORTHO05D007281 1.9e-35 153.3 165 50.3
Nitab4.5_0002780g0060 Nicotiana tabacum HOM05D006088 ORTHO05D007281 3.2e-35 152.5 111 66.7
Phvul.001G074500 Phaseolus vulgaris HOM05D006088 ORTHO05D007281 2.1e-34 149.8 157 55.4
Cfa016204 Carpinus fangiana HOM05D006088 ORTHO05D007281 4.0e-33 145.6 147 51.0
ATR0757G203 Amborella trichopoda HOM05D006088 ORTHO05D007281 2.6e-32 142.9 173 44.5
PSO675G7769 Papaver somniferum HOM05D006088 ORTHO05D007281 4.4e-32 142.1 171 46.8
PSO732G0342 Papaver somniferum HOM05D006088 ORTHO05D007281 7.0e-30 134.8 173 44.5
Haze_00245 Corylus avellana HOM05D006088 ORTHO05D007281 9.1e-30 134.4 109 59.6
Haze_00251 Corylus avellana HOM05D006088 ORTHO05D007281 9.1e-30 134.4 109 59.6
unitig_52.g17713 Utricularia gibba HOM05D006088 ORTHO05D007281 4.5e-29 132.1 107 62.6
AUR62035569 Chenopodium quinoa HOM05D006088 ORTHO05D007281 1.1e-27 127.5 127 55.1
Os07g0452400 Oryza sativa ssp. japonica HOM05D006088 ORTHO05D007281 7.2e-27 124.8 179 41.9
Cpa.g.sc3.114 Carica papaya HOM05D006088 ORTHO05D007281 2.4e-22 109.8 156 41.7
ECA238G4490 Erigeron canadensis HOM05D006088 ORTHO05D007281 7.0e-22 108.2 172 41.9
SMO266G0077 Selaginella moellendorffii HOM05D006088 ORTHO05D007281 1.8e-14 83.6 149 34.9
Mapoly0133s0016 Marchantia polymorpha HOM05D006088 ORTHO05D007281 1.0e-09 67.8 279 25.1
AagrBONN_evm.TU.Sc2ySwM_117.2926 Anthoceros agrestis HOM05D006088 ORTHO05D007281 1.8e-09 67.0 124 33.1
SEGI_18369 Sequoiadendron giganteum HOM05D006088 ORTHO05D007281 1.8e-09 67.0 166 28.9
Pp3c11_25950 Physcomitrium patens HOM05D006088 ORTHO05D007281 8.3e-07 58.2 116 34.5


User provided reference genes

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