Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g06840 Coffea canephora HOM05D006160 ORTHO05D007674 4.7e-109 397.9 203 100.0
Cc07_g02680 Coffea canephora HOM05D006160 ORTHO05D007674 3.3e-86 322.0 194 88.1
Cc11_g06740 Coffea canephora HOM05D006160 ORTHO05D007674 3.6e-61 238.8 194 70.6
Sopen02g032010 Solanum pennellii HOM05D006160 ORTHO05D007674 1.3e-50 203.8 186 59.1
Solyc02g087260.1 Solanum lycopersicum HOM05D006160 ORTHO05D007674 1.7e-50 203.4 186 59.1
Oeu050236.1 Olea europaea HOM05D006160 ORTHO05D007674 4.9e-50 201.8 185 62.2
PGSC0003DMG400001293 Solanum tuberosum HOM05D006160 ORTHO05D007674 5.4e-49 198.4 186 57.5
MSTRG.15499 Avicennia marina HOM05D006160 ORTHO05D007674 1.3e-47 193.7 192 56.8
CSS0008843 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 3.9e-47 192.2 185 57.3
CSS0046343 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 1.9e-46 189.9 185 56.8
Lj7P407T47 Lonicera japonica HOM05D006160 ORTHO05D007674 3.1e-44 182.6 187 54.0
Nitab4.5_0007185g0010 Nicotiana tabacum HOM05D006160 ORTHO05D007674 3.1e-44 182.6 194 53.1
Cc11_g06750 Coffea canephora HOM05D006160 ORTHO05D007674 2.6e-43 179.5 101 95.0
Cpa.g.c29962.2 Carica papaya HOM05D006160 ORTHO05D007674 3.4e-43 179.1 187 52.9
QL02p078501 Quercus lobata HOM05D006160 ORTHO05D007674 7.6e-43 177.9 192 52.6
SalBow1G6035 Salvia bowleyana HOM05D006160 ORTHO05D007674 9.9e-43 177.6 189 52.9
Actinidia33976 Actinidia chinensis HOM05D006160 ORTHO05D007674 2.9e-42 176.0 185 53.5
Migut.K01355 Erythranthe guttata HOM05D006160 ORTHO05D007674 3.8e-42 175.6 185 53.5
CAN.G206.64 Capsicum annuum HOM05D006160 ORTHO05D007674 4.9e-42 175.3 184 52.7
Hma1.2p1_0849F.1_g228140 Hydrangea macrophylla HOM05D006160 ORTHO05D007674 8.4e-42 174.5 193 49.7
TWI56G1459 Tripterygium wilfordii HOM05D006160 ORTHO05D007674 1.4e-41 173.7 194 52.6
Cfa007476 Carpinus fangiana HOM05D006160 ORTHO05D007674 4.2e-41 172.2 189 52.9
PGR083G2234 Punica granatum HOM05D006160 ORTHO05D007674 4.2e-41 172.2 185 53.0
Haze_14622 Corylus avellana HOM05D006160 ORTHO05D007674 9.3e-41 171.0 190 53.7
unitig_748.g8439 Utricularia gibba HOM05D006160 ORTHO05D007674 9.3e-41 171.0 195 52.8
Potri.005G122800 Populus trichocarpa HOM05D006160 ORTHO05D007674 2.1e-40 169.9 191 49.7
CiPaw.04G022200 Carya illinoinensis HOM05D006160 ORTHO05D007674 3.5e-40 169.1 186 50.5
Sabra05G0101000 Salix brachista HOM05D006160 ORTHO05D007674 4.6e-40 168.7 187 51.3
DCAR_013983 Daucus carota HOM05D006160 ORTHO05D007674 6.0e-40 168.3 184 53.3
TAR629G0883 Trochodendron aralioides HOM05D006160 ORTHO05D007674 6.0e-40 168.3 186 50.5
MELO3C009921.2 Cucumis melo HOM05D006160 ORTHO05D007674 1.1e-38 164.1 184 50.5
CsaV3_3G042010 Cucumis sativus L. HOM05D006160 ORTHO05D007674 1.5e-38 163.7 184 50.5
GSVIVG01032544001 Vitis vinifera HOM05D006160 ORTHO05D007674 1.9e-38 163.3 186 51.6
Manes.11G038900 Manihot esculenta HOM05D006160 ORTHO05D007674 2.5e-38 162.9 189 50.3
TAR622G0926 Trochodendron aralioides HOM05D006160 ORTHO05D007674 3.3e-38 162.5 198 47.0
ClCG10G014570 Citrullus lanatus HOM05D006160 ORTHO05D007674 5.6e-38 161.8 193 49.7
Rhsim08G0057500 Rhododendron simsii HOM05D006160 ORTHO05D007674 5.6e-38 161.8 182 50.5
Rhsim08G0061700 Rhododendron simsii HOM05D006160 ORTHO05D007674 5.6e-38 161.8 182 50.5
CiPaw.03G033700 Carya illinoinensis HOM05D006160 ORTHO05D007674 1.3e-37 160.6 191 49.2
RcHm_v2.0_Chr2g0170271 Rosa chinensis HOM05D006160 ORTHO05D007674 2.1e-37 159.8 185 49.7
PSO591G0049 Papaver somniferum HOM05D006160 ORTHO05D007674 3.1e-36 156.0 187 45.5
SGA_v2.0_scaffold224G42970 Striga asiatica HOM05D000629 ORTHO05D000576 5.3e-36 155.2 167 52.7
Aqoxy3G03111 Aquilegia oxysepala HOM05D006160 ORTHO05D007674 1.5e-35 153.7 194 45.4
PSO832G1329 Papaver somniferum HOM05D006160 ORTHO05D007674 2.6e-35 152.9 187 44.9
Sed0020076 Sechium edule HOM05D006160 ORTHO05D007674 5.8e-35 151.8 183 49.7
Duzib264G1011 Durio zibethinus HOM05D006160 ORTHO05D007674 1.7e-34 150.2 194 46.4
Thecc.04G002600 Theobroma cacao HOM05D006160 ORTHO05D007674 3.8e-34 149.1 185 47.0
Thecc.04G002700 Theobroma cacao HOM05D006160 ORTHO05D007674 3.8e-34 149.1 185 47.0
COL.COLO4_34360 Corchorus olitorius HOM05D006160 ORTHO05D007674 4.9e-34 148.7 187 46.5
Prupe.3G278200 Prunus persica HOM05D006160 ORTHO05D007674 4.9e-34 148.7 188 47.3
Lsat_1_v5_gn_0_16501 Lactuca sativa HOM05D006160 ORTHO05D007674 1.1e-33 147.5 196 46.9
Gohir.A05G361800 Gossypium hirsutum HOM05D006160 ORTHO05D007674 2.5e-33 146.4 185 46.5
Nn3g17021 Nelumbo nucifera HOM05D006160 ORTHO05D007674 3.2e-33 146.0 187 44.9
FAN09G3358 Fragaria x ananassa HOM05D006160 ORTHO05D007674 5.5e-33 145.2 186 47.8
Ciclev10013666m.g Citrus clementina HOM05D006160 ORTHO05D007674 1.6e-32 143.7 188 47.3
FvH4_6g50020 Fragaria vesca HOM05D006160 ORTHO05D007674 2.7e-32 142.9 186 47.8
MD17G1040800 Malus domestica HOM05D006160 ORTHO05D007674 3.5e-32 142.5 191 47.1
AUR62022120 Chenopodium quinoa HOM05D006160 ORTHO05D007674 4.6e-32 142.1 185 45.9
FAN14G4363 Fragaria x ananassa HOM05D006160 ORTHO05D007674 1.0e-31 141.0 186 47.8
THA.LOC104802410 Tarenaya hassleriana HOM05D006160 ORTHO05D007674 3.9e-31 139.0 184 45.7
VMungo1383G0493 Vigna mungo HOM05D006160 ORTHO05D007674 3.9e-31 139.0 186 45.2
Glyma.19G103966 Glycine max HOM05D006160 ORTHO05D007674 5.1e-31 138.7 185 45.4
FAN05G0598 Fragaria x ananassa HOM05D006160 ORTHO05D007674 1.1e-30 137.5 186 45.2
Gohir.D04G052600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.1e-30 137.5 185 45.4
Gorai.012G058700 Gossypium raimondii HOM05D006160 ORTHO05D007674 1.1e-30 137.5 185 45.4
Sc20g0002680 Simmondsia chinensis HOM05D006160 ORTHO05D007674 3.3e-30 136.0 186 41.9
MBI15_g14839_MAGBIO Magnolia biondii HOM05D006160 ORTHO05D007674 4.3e-30 135.6 186 43.5
CDE04G3446 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 9.6e-30 134.4 194 41.2
Duzib147G1447 Durio zibethinus HOM05D006160 ORTHO05D007674 9.6e-30 134.4 185 45.4
Nn4g22919 Nelumbo nucifera HOM05D006160 ORTHO05D007674 4.8e-29 132.1 188 42.0
AL3G10850 Arabidopsis lyrata HOM05D006160 ORTHO05D007674 6.3e-29 131.7 186 39.8
AT3G01360 Arabidopsis thaliana HOM05D006160 ORTHO05D007674 6.3e-29 131.7 192 40.6
CARHR075620 Cardamine hirsuta HOM05D006160 ORTHO05D007674 6.3e-29 131.7 185 44.9
Phvul.001G084200 Phaseolus vulgaris HOM05D006160 ORTHO05D007674 1.8e-28 130.2 186 44.6
A05p44620 Brassica napus HOM05D006160 ORTHO05D007674 3.1e-28 129.4 189 39.7
MD09G1040200 Malus domestica HOM05D006160 ORTHO05D007674 3.1e-28 129.4 196 42.9
BraA05t23194Z Brassica rapa HOM05D006160 ORTHO05D007674 9.0e-28 127.9 184 40.8
Carub.0003s0073 Capsella rubella HOM05D006160 ORTHO05D007674 9.0e-28 127.9 184 39.7
Thhalv10022440m.g Eutrema salsugineum HOM05D006160 ORTHO05D007674 4.5e-27 125.6 188 40.4
Gohir.A03G007400 Gossypium hirsutum HOM05D006160 ORTHO05D007674 5.9e-27 125.2 153 46.4
Ca_27075_v3 Cicer arietinum L. HOM05D006160 ORTHO05D007674 7.6e-27 124.8 189 41.8
Gorai.006G069300 Gossypium raimondii HOM05D006160 ORTHO05D007674 7.6e-27 124.8 153 46.4
Sp3g00710 Schrenkiella parvula HOM05D006160 ORTHO05D007674 7.6e-27 124.8 184 39.7
BcaC05g30463 Brassica carinata HOM05D006160 ORTHO05D007674 1.0e-26 124.4 189 39.2
Gohir.A01G199600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.3e-26 124.0 160 45.6
Gohir.D02G203256 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.3e-26 124.0 153 46.4
BolC5t35143H Brassica oleracea HOM05D006160 ORTHO05D007674 2.2e-26 123.2 184 39.7
Gohir.A06G128104 Gossypium hirsutum HOM05D006160 ORTHO05D007674 2.2e-26 123.2 153 45.8
C09p75210 Brassica napus HOM05D006160 ORTHO05D007674 2.9e-26 122.9 185 41.6
Gohir.D09G171500 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.8e-26 122.5 153 45.8
Gohir.A02G134601 Gossypium hirsutum HOM05D006160 ORTHO05D007674 5.0e-26 122.1 149 46.3
Gohir.A07G181850 Gossypium hirsutum HOM05D006160 ORTHO05D007674 6.5e-26 121.7 153 46.4
Gohir.D09G039200 Gossypium hirsutum HOM05D006160 ORTHO05D007674 6.5e-26 121.7 133 48.9
Atru.chr8.2408 Acer truncatum HOM05D006160 ORTHO05D007674 8.4e-26 121.3 174 46.6
Eucgr.J02169 Eucalyptus grandis HOM05D006160 ORTHO05D007674 8.4e-26 121.3 189 38.1
Gohir.A12G126333 Gossypium hirsutum HOM05D006160 ORTHO05D007674 8.4e-26 121.3 149 46.3
Aa31LG5G10480 Aethionema arabicum HOM05D006160 ORTHO05D007674 1.4e-25 120.6 184 39.1
Gohir.A10G208350 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.9e-25 120.2 153 45.1
TPR.G39149 Trifolium pratense HOM05D006160 ORTHO05D007674 2.5e-25 119.8 206 36.9
Lalb_Chr10g0093421 Lupinus albus HOM05D006160 ORTHO05D007674 3.2e-25 119.4 117 53.8
Gohir.D12G020250 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.2e-24 117.5 114 51.8
ATR0021G006 Amborella trichopoda HOM05D006160 ORTHO05D007674 4.6e-24 115.5 185 37.3
Medtr7g034135 Medicago truncatula HOM05D006160 ORTHO05D007674 6.1e-24 115.2 187 40.6
unitig_32.g10741 Utricularia gibba HOM05D006160 ORTHO05D007674 8.7e-23 111.3 148 47.3
Psat3g172360 Pisum sativum HOM05D006160 ORTHO05D007674 6.3e-21 105.1 120 45.8
SEGI_35137 Sequoiadendron giganteum HOM05D006160 ORTHO05D007674 1.4e-20 104.0 185 32.4
Nitab4.5_0004905g0010 Nicotiana tabacum HOM05D006160 ORTHO05D007674 5.3e-20 102.1 75 61.3
Gorai.001G255400 Gossypium raimondii HOM05D006160 ORTHO05D007674 3.2e-17 92.8 136 40.4
Lsat_1_v5_gn_4_173961 Lactuca sativa HOM05D006160 ORTHO05D007674 6.1e-16 88.6 84 48.8
Gorai.006G069400 Gossypium raimondii HOM05D006160 ORTHO05D007674 6.7e-15 85.1 100 45.0
HanXRQChr17g0547171 Helianthus annuus HOM05D006160 ORTHO05D007674 8.8e-15 84.7 179 38.0
Dinv35018 Davidia involucrata HOM05D006160 ORTHO05D007674 1.1e-14 84.3 101 53.5
Lj1g0002469 Lotus japonicus HOM05D006160 ORTHO05D007674 4.3e-14 82.4 54 63.0
Mapoly0039s0012 Marchantia polymorpha HOM05D006160 ORTHO05D007674 8.2e-13 78.2 185 33.0
EL10Ac7g18003 Beta vulgaris HOM05D006160 ORTHO05D007674 2.6e-11 73.2 185 29.7
CDE07G1150 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 2.6e-11 73.2 69 53.6
Peaxi162Scf00129g00711 Petunia axillaris HOM05D006160 ORTHO05D007674 1.1e-09 67.8 41 65.9
arahy.Tifrunner.gnm1.ann1.JXM62U Arachis hypogaea HOM05D006160 ORTHO05D007674 5.5e-09 65.5 50 56.0
AUR62001209 Chenopodium quinoa HOM05D006160 ORTHO05D007674 5.5e-09 65.5 64 43.8
Pp3c16_16610 Physcomitrium patens HOM05D006160 ORTHO05D007674 2.1e-08 63.5 95 33.7
Os06g0238900 Oryza sativa ssp. japonica HOM05D006160 ORTHO05D007674 2.7e-08 63.2 110 34.5
HPP92_025618 Vanilla planifolia HOM05D006160 ORTHO05D007674 2.7e-08 63.2 120 35.0
SMO115G0117 Selaginella moellendorffii HOM05D006160 ORTHO05D007674 6.1e-08 62.0 58 44.8
Pp3c5_8910 Physcomitrium patens HOM05D001193 ORTHO05D001016 7.9e-08 61.6 207 24.6
Zm00001eb279980 Zea mays HOM05D006160 ORTHO05D007674 7.9e-08 61.6 105 38.1
ECA246G4454 Erigeron canadensis HOM05D006160 ORTHO05D007674 3.9e-07 59.3 35 62.9
SMO115G0077 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 5.1e-07 58.9 73 37.0
SMO165G0033 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 4.4e-06 55.8 194 25.3


User provided reference genes

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