Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 2.0e-241 838.6 401 100.0
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 5.0e-147 525.0 396 64.4
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.9e-146 523.1 401 63.8
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 4.7e-145 518.5 396 64.1
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 4.7e-145 518.5 399 63.7
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.0e-144 517.3 398 64.6
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 6.3e-142 508.1 392 64.3
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 8.3e-142 507.7 396 64.1
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 5.4e-141 505.0 396 61.9
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 3.5e-140 502.3 391 64.2
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 3.5e-140 502.3 404 62.4
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 6.6e-139 498.0 396 62.4
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 2.8e-137 492.7 401 61.3
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.7e-137 491.9 397 62.0
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.0e-136 488.8 397 61.0
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.2e-135 487.3 397 61.0
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 3.4e-135 485.7 393 60.3
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.9e-134 482.6 391 61.1
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.1e-133 480.7 395 61.0
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 3.2e-133 479.2 390 60.3
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 4.1e-133 478.8 393 59.3
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 5.4e-133 478.4 379 61.7
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 7.0e-133 478.0 397 60.2
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 1.2e-132 477.2 390 61.8
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 2.0e-132 476.5 386 61.7
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 7.8e-132 474.6 404 59.9
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 2.5e-130 469.5 379 60.7
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 2.1e-129 466.5 396 59.3
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 3.6e-129 465.7 399 58.6
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 2.3e-128 463.0 400 58.0
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 3.1e-128 462.6 392 59.4
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 4.0e-128 462.2 380 61.1
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 6.8e-128 461.5 395 59.2
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.5e-127 460.3 392 58.7
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 4.4e-127 458.8 404 56.2
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 4.4e-127 458.8 385 59.7
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 4.9e-126 455.3 437 52.4
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.4e-125 453.8 390 56.2
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 9.2e-125 451.1 394 56.9
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 3.0e-123 446.0 397 55.7
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-122 444.1 389 56.6
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.1e-122 444.1 389 56.6
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 1.1e-122 444.1 390 56.2
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.9e-122 443.4 393 58.3
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.3e-122 442.6 444 54.1
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 7.3e-122 441.4 389 55.5
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 1.6e-121 440.3 390 56.2
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.6e-121 440.3 392 55.4
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 2.8e-121 439.5 393 55.2
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 6.2e-121 438.3 396 57.1
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.4e-120 437.2 397 55.7
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.8e-120 436.8 389 55.0
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 2.0e-119 433.3 389 55.0
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 3.4e-119 432.6 390 55.6
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 4.4e-119 432.2 385 56.6
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 7.5e-119 431.4 385 56.9
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 9.8e-119 431.0 397 53.4
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 4.9e-118 428.7 400 55.2
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 4.1e-117 425.6 386 55.2
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 3.5e-116 422.5 393 54.7
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 7.8e-116 421.4 394 54.8
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 7.8e-116 421.4 422 52.8
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 7.8e-116 421.4 397 54.2
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.7e-115 420.2 394 55.6
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 2.3e-115 419.9 394 52.8
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 3.0e-115 419.5 394 56.1
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 6.6e-115 418.3 390 54.1
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 3.3e-114 416.0 392 53.6
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 7.3e-114 414.8 417 53.0
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 6.2e-113 411.8 323 63.8
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.4e-112 410.6 394 54.6
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 5.2e-112 408.7 380 55.3
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 8.9e-112 407.9 393 51.4
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 2.6e-111 406.4 343 60.1
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 3.4e-111 406.0 370 55.1
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 5.8e-111 405.2 378 55.3
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 3.8e-110 402.5 417 51.3
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.4e-109 400.6 345 60.0
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 1.2e-108 397.5 397 52.6
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 4.4e-103 379.0 391 50.4
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.3e-99 367.5 392 49.7
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 2.3e-99 366.7 421 50.6
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 8.7e-99 364.8 390 49.0
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 2.0e-95 353.6 292 56.5
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 1.5e-90 337.4 335 51.0
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 4.0e-88 329.3 317 52.7
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 4.6e-84 315.8 391 43.7
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 1.3e-83 314.3 331 51.1
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 1.8e-83 313.9 392 42.9
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 4.8e-81 305.8 286 54.9
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 1.4e-80 304.3 234 62.8
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 3.4e-79 299.7 330 48.8
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 5.8e-79 298.9 384 43.0
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 1.0e-75 288.1 298 51.7
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 1.0e-75 288.1 467 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 6.3e-73 278.9 316 48.7
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 4.8e-65 252.7 275 48.4
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 3.1e-64 250.0 250 52.4
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 4.1e-64 249.6 279 48.0
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.9e-62 243.4 177 63.3
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 6.3e-57 225.7 275 46.9
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.5e-55 221.1 127 79.5
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 4.5e-55 219.5 383 36.8
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 3.8e-54 216.5 286 43.0
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.5e-53 213.8 142 67.6
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 5.9e-47 192.6 111 78.4
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.2e-46 190.7 150 59.3
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.3e-43 180.6 241 43.2
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.5e-42 177.9 146 55.5
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 6.3e-41 172.6 231 42.0
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 1.8e-40 171.0 112 66.1
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 1.8e-40 171.0 102 71.6
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 5.3e-40 169.5 220 43.2
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 3.2e-37 160.2 131 64.1
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 6.8e-35 152.5 96 69.8
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 4.4e-34 149.8 89 75.3
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 5.7e-26 122.9 87 59.8
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 7.5e-26 122.5 111 54.1
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 3.8e-22 110.2 213 34.7
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.0e-18 97.8 63 66.7
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 7.5e-18 95.9 102 44.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 7.5e-18 95.9 102 44.1
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 9.8e-18 95.5 84 59.5
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 2.7e-15 87.4 60 65.0
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 2.7e-15 87.4 90 47.8
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.3e-14 85.1 57 68.4
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.9e-13 81.3 49 71.4
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 1.9e-13 81.3 105 41.9
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 2.5e-13 80.9 50 66.0
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 9.5e-13 79.0 174 31.6
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 9.5e-13 79.0 174 31.6
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.5e-10 71.6 227 27.8
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 3.4e-10 70.5 78 51.3
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 6.4e-09 66.2 111 35.1
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 1.7e-06 58.2 85 32.9
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 3.0e-06 57.4 148 29.1


User provided reference genes

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