Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 5.8e-36 153.7 77 100.0
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.2e-27 125.2 75 77.3
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-25 119.4 75 76.0
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.7e-25 118.2 75 74.7
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.6e-25 117.5 75 73.3
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.0e-24 116.3 75 77.3
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 1.3e-24 115.9 73 74.0
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 5.1e-24 114.0 73 72.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 5.1e-24 114.0 73 72.6
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 8.7e-24 113.2 75 68.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.1e-23 112.8 73 69.9
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.9e-23 112.1 75 66.7
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.5e-23 111.7 75 69.3
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 2.5e-23 111.7 75 72.0
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.5e-23 111.7 75 68.0
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 3.3e-23 111.3 74 71.6
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 4.3e-23 110.9 74 71.6
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 5.7e-23 110.5 75 68.0
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 5.7e-23 110.5 73 71.2
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 7.4e-23 110.2 73 67.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 7.4e-23 110.2 75 65.3
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 9.6e-23 109.8 75 64.0
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.3e-22 109.4 73 67.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 2.1e-22 108.6 73 68.5
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 2.8e-22 108.2 75 66.7
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.8e-22 108.2 74 68.9
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.7e-22 107.8 73 69.9
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.7e-22 107.8 74 70.3
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 4.8e-22 107.5 73 69.9
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.8e-22 107.5 73 67.1
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 6.3e-22 107.1 73 67.1
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 8.2e-22 106.7 73 69.9
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 8.2e-22 106.7 73 65.8
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 8.2e-22 106.7 74 67.6
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 8.2e-22 106.7 74 67.6
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.1e-21 106.3 74 68.9
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.1e-21 106.3 73 65.8
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.1e-21 106.3 73 67.1
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.4e-21 105.9 73 67.1
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.4e-21 105.9 70 67.1
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.4e-21 105.9 74 70.3
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 1.4e-21 105.9 75 66.7
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.8e-21 105.5 73 64.4
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.8e-21 105.5 73 64.4
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 2.4e-21 105.1 73 68.5
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 2.4e-21 105.1 73 67.1
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 3.1e-21 104.8 73 65.8
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.1e-21 104.8 73 64.4
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 4.1e-21 104.4 73 63.0
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.1e-21 104.4 74 70.3
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.1e-21 104.4 74 70.3
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 5.3e-21 104.0 73 64.4
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.9e-21 103.6 76 65.8
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 6.9e-21 103.6 68 70.6
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 9.0e-21 103.2 73 64.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.2e-20 102.8 75 65.3
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-20 102.8 73 64.4
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.5e-20 102.4 73 61.6
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.5e-20 102.4 76 68.4
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.0e-20 102.1 73 67.1
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.6e-20 101.7 76 64.5
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.6e-20 101.7 76 64.5
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 3.4e-20 101.3 74 66.2
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 4.5e-20 100.9 73 64.4
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.5e-20 100.9 73 63.0
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.9e-20 100.5 73 64.4
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.0e-19 99.8 76 61.8
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.0e-19 99.8 74 64.9
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.3e-19 99.4 76 63.2
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.3e-19 99.4 73 63.0
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.3e-19 99.4 74 64.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 2.2e-19 98.6 68 67.6
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.2e-19 98.6 73 64.4
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.9e-19 98.2 75 60.0
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.8e-19 97.8 73 61.6
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.8e-19 97.8 73 61.6
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.8e-19 97.8 73 61.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.8e-19 97.8 77 59.7
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 6.5e-19 97.1 71 62.0
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 8.5e-19 96.7 75 60.0
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.1e-18 96.3 76 64.5
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.4e-18 95.9 67 65.7
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 1.9e-18 95.5 73 60.3
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.9e-18 95.5 75 57.3
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.5e-18 95.1 73 61.6
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 2.5e-18 95.1 71 62.0
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.5e-18 95.1 75 60.0
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.5e-18 95.1 67 65.7
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 5.5e-18 94.0 73 61.6
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 9.3e-18 93.2 73 57.5
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.6e-17 92.4 70 61.4
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.1e-17 92.0 73 57.5
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 2.1e-17 92.0 73 57.5
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.6e-17 90.9 73 58.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 6.1e-17 90.5 64 65.6
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 7.9e-17 90.1 68 64.7
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.3e-16 89.4 68 63.2
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.3e-16 89.4 66 60.6
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.3e-16 89.4 66 65.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.8e-16 89.0 69 60.9
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.8e-16 89.0 74 62.2
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.8e-16 89.0 67 65.7
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.3e-16 88.6 74 59.5
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.0e-16 88.2 74 56.8
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.0e-16 88.2 74 58.1
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 3.9e-16 87.8 69 62.3
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 3.9e-16 87.8 69 62.3
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 3.9e-16 87.8 69 62.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.9e-16 87.8 69 60.9
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 6.7e-16 87.0 74 58.1
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 6.7e-16 87.0 74 58.1
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 6.7e-16 87.0 74 58.1
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 6.7e-16 87.0 74 58.1
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 6.7e-16 87.0 74 58.1
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 8.7e-16 86.7 74 58.1
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 8.7e-16 86.7 74 58.1
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-15 86.3 69 60.9
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-15 86.3 69 60.9
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.1e-15 86.3 69 60.9
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.5e-15 85.9 66 65.2
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.9e-15 85.5 74 56.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.5e-15 85.1 74 56.8
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 2.5e-15 85.1 74 55.4
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 2.5e-15 85.1 74 55.4
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.5e-15 85.1 74 56.8
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 5.7e-15 84.0 68 61.8
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 7.4e-15 83.6 74 54.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.3e-14 82.8 66 63.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.2e-14 82.0 74 54.1
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.7e-14 81.3 59 61.0
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 4.8e-14 80.9 73 50.7
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 6.3e-14 80.5 66 60.6
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 8.2e-14 80.1 75 49.3
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 8.2e-14 80.1 73 50.7
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 2.4e-13 78.6 51 72.5
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 6.9e-13 77.0 52 67.3
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 9.1e-13 76.6 62 59.7
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.4e-10 69.3 69 47.8
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 5.5e-10 67.4 72 51.4
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 5.5e-10 67.4 65 53.8
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 1.6e-09 65.9 59 55.9
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 2.1e-09 65.5 69 56.5
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 4.4e-07 57.8 38 73.7
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.3e-06 56.2 73 46.6
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 6.3e-06 53.9 56 39.3


User provided reference genes

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