Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 4.8e-48 194.1 95 100.0
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 1.1e-31 139.8 69 91.3
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 1.4e-31 139.4 69 91.3
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 1.8e-31 139.0 69 91.3
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 4.1e-31 137.9 69 89.9
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 7.0e-31 137.1 69 89.9
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 9.1e-31 136.7 69 89.9
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 9.1e-31 136.7 69 89.9
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.0e-30 135.6 69 88.4
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.0e-30 135.6 69 88.4
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 2.6e-30 135.2 69 88.4
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 3.5e-30 134.8 69 89.9
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 4.5e-30 134.4 69 88.4
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 5.9e-30 134.0 69 89.9
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 5.9e-30 134.0 69 89.9
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 7.7e-30 133.7 69 85.5
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 7.7e-30 133.7 69 87.0
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 1.0e-29 133.3 69 87.0
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 1.3e-29 132.9 69 87.0
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 1.3e-29 132.9 69 87.0
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 85.5
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 1.7e-29 132.5 69 87.0
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 2.2e-29 132.1 69 87.0
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 2.2e-29 132.1 69 85.5
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 2.2e-29 132.1 69 85.5
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.9e-29 131.7 69 88.4
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.9e-29 131.7 69 88.4
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.9e-29 131.7 69 88.4
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.9e-29 131.7 69 88.4
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 3.8e-29 131.3 69 85.5
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 3.8e-29 131.3 69 85.5
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.8e-29 131.3 69 85.5
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 3.8e-29 131.3 69 85.5
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 3.8e-29 131.3 69 84.1
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 5.0e-29 131.0 69 84.1
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 5.0e-29 131.0 69 85.5
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 5.0e-29 131.0 69 85.5
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 5.0e-29 131.0 69 85.5
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 5.0e-29 131.0 69 85.5
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 5.0e-29 131.0 69 84.1
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 6.5e-29 130.6 69 84.1
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 6.5e-29 130.6 69 84.1
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 6.5e-29 130.6 69 84.1
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 6.5e-29 130.6 69 84.1
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 6.5e-29 130.6 69 84.1
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 6.5e-29 130.6 69 85.5
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 84.1
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 84.1
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 84.1
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 87.0
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 84.1
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 84.1
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 84.1
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 1.5e-28 129.4 69 82.6
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 1.5e-28 129.4 69 84.1
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 1.5e-28 129.4 69 85.5
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.5e-28 129.4 69 87.0
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 1.5e-28 129.4 69 82.6
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.5e-28 129.4 69 84.1
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 1.9e-28 129.0 69 85.5
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 1.9e-28 129.0 69 85.5
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.9e-28 129.0 69 82.6
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 2.5e-28 128.6 69 85.5
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 2.5e-28 128.6 69 84.1
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 2.5e-28 128.6 69 82.6
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 2.5e-28 128.6 69 82.6
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 2.5e-28 128.6 69 84.1
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 2.5e-28 128.6 69 84.1
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 4.2e-28 127.9 69 82.6
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 4.2e-28 127.9 69 84.1
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 4.2e-28 127.9 69 82.6
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 4.2e-28 127.9 69 82.6
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 5.5e-28 127.5 69 84.1
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 5.5e-28 127.5 69 82.6
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 7.2e-28 127.1 69 82.6
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 7.2e-28 127.1 69 82.6
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 7.2e-28 127.1 69 81.2
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 9.4e-28 126.7 69 82.6
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 9.4e-28 126.7 69 84.1
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 9.4e-28 126.7 69 84.1
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 9.4e-28 126.7 69 82.6
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 1.2e-27 126.3 69 82.6
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 1.2e-27 126.3 69 82.6
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 1.2e-27 126.3 69 82.6
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 2.1e-27 125.6 69 82.6
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.7e-27 125.2 68 85.3
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.7e-27 125.2 68 85.3
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.7e-27 125.2 69 84.1
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 3.6e-27 124.8 65 84.6
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 3.6e-27 124.8 65 84.6
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 3.6e-27 124.8 69 79.7
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 1.4e-26 122.9 69 81.2
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 1.8e-26 122.5 69 78.3
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 4.0e-26 121.3 69 78.3
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 1.2e-25 119.8 65 81.5
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.5e-25 119.4 63 84.1
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.0e-25 119.0 72 76.4
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.0e-25 119.0 72 76.4
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 2.6e-25 118.6 72 76.4
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.6e-25 118.6 72 76.4
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 3.3e-25 118.2 72 75.0
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 5.7e-25 117.5 63 82.5
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.7e-25 117.5 72 75.0
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 3.7e-24 114.8 64 78.1
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 3.7e-24 114.8 60 85.0
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 4.8e-24 114.4 65 76.9
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 1.1e-23 113.2 60 81.7
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 1.1e-23 113.2 65 73.8
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 1.7e-21 105.9 57 80.7
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 2.5e-20 102.1 52 88.5
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 2.5e-20 102.1 52 88.5
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 3.2e-20 101.7 64 70.3
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 9.4e-20 100.1 61 70.5
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 9.4e-20 100.1 57 82.5
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 2.7e-19 98.6 52 86.5
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 9.8e-17 90.1 54 68.5
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 2.2e-16 89.0 53 73.6
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 1.8e-15 85.9 55 61.8
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 2.4e-15 85.5 58 60.3
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 5.4e-15 84.3 54 63.0
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 2.2e-08 62.4 70 50.0
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 1.8e-07 59.3 52 51.9
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 7.0e-07 57.4 69 47.8


User provided reference genes

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