Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.2e-149 533.1 258 100.0
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.1e-99 367.1 261 75.1
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 5.6e-91 338.2 261 68.6
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.8e-89 333.2 257 67.7
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 2.3e-89 332.8 261 66.7
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.3e-89 332.8 261 67.0
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 5.2e-89 331.6 256 68.8
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 8.9e-89 330.9 261 67.4
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 8.9e-89 330.9 261 67.8
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.5e-88 330.1 261 66.3
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.0e-88 329.7 261 67.4
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.0e-88 329.7 260 66.5
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 5.8e-88 328.2 261 67.8
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 5.8e-88 328.2 253 68.8
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 5.8e-88 328.2 261 67.4
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 7.6e-88 327.8 265 67.5
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.9e-88 327.4 261 67.8
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.3e-87 327.0 263 67.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-87 327.0 261 67.8
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.7e-87 326.6 257 67.3
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.9e-87 325.9 261 66.7
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.9e-87 325.9 261 66.7
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.9e-87 325.9 261 67.4
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 3.7e-87 325.5 261 66.3
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 4.9e-87 325.1 261 65.5
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 6.4e-87 324.7 261 65.5
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 8.4e-87 324.3 261 65.5
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 8.4e-87 324.3 261 65.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.1e-86 323.9 262 66.0
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 7.1e-86 321.2 249 67.9
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 7.1e-86 321.2 261 62.8
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.6e-85 320.1 255 65.9
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 2.7e-85 319.3 257 63.8
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.7e-85 319.3 257 64.6
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 4.6e-85 318.5 261 64.8
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.0e-84 317.4 271 64.6
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.0e-84 317.4 259 64.1
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.0e-84 317.4 263 64.3
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 2.3e-84 316.2 261 64.0
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.3e-84 316.2 256 64.8
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 3.0e-84 315.8 265 64.2
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 3.9e-84 315.5 257 65.0
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 5.1e-84 315.1 239 68.2
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 6.6e-84 314.7 253 66.0
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 8.6e-84 314.3 282 61.3
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.9e-83 313.2 262 63.4
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.5e-83 312.8 257 64.2
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.5e-83 312.8 260 64.6
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 4.3e-83 312.0 260 64.6
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 5.6e-83 311.6 261 63.2
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 7.3e-83 311.2 257 65.4
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 7.3e-83 311.2 260 64.6
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.6e-82 310.1 252 65.5
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 1.6e-82 310.1 260 64.2
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.8e-82 309.3 261 64.8
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 3.6e-82 308.9 250 64.4
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 3.6e-82 308.9 260 63.5
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 4.7e-82 308.5 260 64.6
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 6.2e-82 308.1 261 61.7
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 6.2e-82 308.1 257 65.0
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 8.1e-82 307.8 261 61.7
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.4e-81 307.0 288 59.7
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.4e-81 307.0 257 63.8
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.8e-81 306.6 261 61.7
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 1.8e-81 306.6 250 63.6
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.8e-81 306.6 271 61.6
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.4e-81 306.2 262 62.6
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 6.8e-81 304.7 248 63.3
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.2e-80 303.9 239 65.7
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.0e-80 303.1 261 60.9
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.6e-80 302.8 260 62.7
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 4.4e-80 302.0 261 60.2
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 4.4e-80 302.0 261 62.1
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 5.8e-80 301.6 261 60.9
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 7.6e-80 301.2 255 62.0
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 9.9e-80 300.8 261 59.8
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 9.9e-80 300.8 261 59.8
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 9.9e-80 300.8 261 59.8
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 9.9e-80 300.8 261 59.8
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 3.8e-79 298.9 261 59.4
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 3.8e-79 298.9 239 65.7
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 4.9e-79 298.5 237 65.0
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.4e-78 297.0 261 59.8
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.9e-78 296.6 237 64.1
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 2.4e-78 296.2 235 65.1
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 7.1e-78 294.7 226 68.6
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 7.1e-78 294.7 256 59.8
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 9.3e-78 294.3 249 62.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.6e-77 293.5 239 64.9
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 2.1e-77 293.1 252 63.9
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 2.7e-77 292.7 237 64.1
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 3.5e-77 292.4 261 62.1
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 6.0e-77 291.6 237 63.3
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 7.8e-77 291.2 296 55.4
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 7.8e-77 291.2 261 59.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.8e-77 291.2 249 64.3
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.3e-76 290.4 235 63.4
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.0e-76 289.3 256 61.7
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 5.1e-76 288.5 251 61.0
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 8.7e-76 287.7 260 59.2
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.9e-75 286.6 248 62.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 3.3e-75 285.8 330 51.8
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 9.6e-75 284.3 250 61.2
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.3e-74 283.9 244 62.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.4e-73 280.4 226 62.8
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 4.0e-73 278.9 239 63.2
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.2e-72 277.3 243 60.5
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.2e-71 273.1 207 67.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.9e-71 272.7 226 64.2
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 5.4e-70 268.5 299 51.2
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 5.4e-70 268.5 237 61.6
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.3e-68 263.8 243 59.3
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 8.7e-68 261.2 262 56.1
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.0e-65 252.3 214 64.5
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.8e-63 245.7 228 55.7
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 3.8e-63 245.7 216 63.4
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.1e-62 244.2 236 55.5
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 4.6e-61 238.8 219 58.4
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 7.9e-61 238.0 216 58.8
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.9e-59 233.4 223 54.7
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.9e-59 233.4 225 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.3e-59 232.3 217 56.2
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.9e-57 224.9 198 60.1
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 5.1e-52 208.8 263 43.0
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.4e-49 199.9 249 48.2
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.2e-48 197.6 145 70.3
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 7.6e-48 194.9 235 48.5
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.2e-47 193.4 227 47.1
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 3.8e-47 192.6 145 69.7
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.9e-43 180.3 136 69.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.5e-43 179.9 224 44.2
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.5e-43 179.9 224 44.2
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.5e-39 165.2 261 39.5
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.4e-38 164.1 250 40.0
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.6e-37 160.6 390 33.8
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.0e-35 153.7 149 51.7
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.5e-35 153.3 269 36.1
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.8e-33 147.1 140 59.3
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 8.5e-31 138.3 121 61.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 9.4e-30 134.8 113 64.6
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-29 134.4 102 70.6
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.5e-27 127.5 122 54.9
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-26 124.4 100 68.0
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.6e-24 117.5 111 53.2
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.3e-23 114.4 124 55.6
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 4.7e-21 105.9 95 61.1
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.4e-17 93.6 82 54.9
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 5.0e-15 85.9 80 55.0
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.1e-13 80.5 70 60.0
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.0e-12 76.6 113 45.1
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 5.7e-11 72.4 116 42.2


User provided reference genes

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