Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 5.5e-245 850.5 427 100.0
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 8.6e-222 773.5 427 90.9
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 5.1e-190 667.9 428 74.3
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 5.1e-190 667.9 427 73.8
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.1e-189 666.8 417 74.8
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 4.3e-189 664.8 426 73.2
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 9.6e-189 663.7 433 73.4
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.3e-188 663.3 416 74.8
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.8e-188 662.1 428 72.0
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 4.8e-188 661.4 427 72.8
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 4.8e-188 661.4 430 73.0
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 8.1e-188 660.6 426 74.2
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.4e-187 659.8 426 73.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.8e-187 659.4 430 72.8
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 4.0e-187 658.3 430 71.6
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 9.0e-187 657.1 426 73.7
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.0e-186 656.0 428 73.4
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 2.2e-185 652.5 423 72.6
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 3.8e-185 651.7 431 70.5
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 4.9e-185 651.4 409 74.6
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.9e-184 649.4 424 72.9
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 4.2e-184 648.3 415 72.8
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 4.2e-184 648.3 427 71.7
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.1e-183 646.0 413 73.8
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 2.1e-183 646.0 430 70.2
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 3.5e-183 645.2 427 71.4
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 6.0e-183 644.4 431 71.0
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 3.0e-182 642.1 429 70.2
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.5e-181 639.0 426 70.2
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 3.3e-181 638.6 426 71.4
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.3e-181 638.6 422 70.1
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 5.6e-181 637.9 426 70.4
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.8e-180 635.6 426 70.0
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.4e-179 633.3 430 69.8
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 3.1e-179 632.1 422 73.0
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 4.0e-179 631.7 430 70.9
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.0e-178 629.4 415 70.8
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 4.5e-178 628.2 426 71.1
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 4.5e-178 628.2 422 70.6
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 7.6e-178 627.5 421 72.0
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 1.7e-177 626.3 423 68.8
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 3.8e-177 625.2 412 71.6
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.1e-176 623.6 430 68.6
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.2e-176 621.7 439 68.1
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 2.1e-175 619.4 430 67.4
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.0e-174 615.5 438 68.5
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.9e-174 615.1 408 68.6
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 5.1e-174 614.8 427 67.7
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.9e-173 612.8 420 70.2
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 5.7e-173 611.3 429 67.6
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 7.4e-173 610.9 442 66.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 9.7e-173 610.5 420 68.8
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.6e-172 609.8 418 67.7
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.2e-172 609.4 429 67.1
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 3.7e-172 608.6 430 67.2
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.1e-171 607.1 429 66.9
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.4e-171 606.7 430 67.4
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.8e-171 606.3 429 67.1
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.1e-171 605.1 418 67.0
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 1.2e-170 603.6 429 66.7
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.5e-170 603.2 426 68.8
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 3.4e-170 602.1 429 66.7
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 4.5e-170 601.7 429 66.4
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 5.9e-170 601.3 429 66.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 7.7e-170 600.9 412 67.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.0e-169 600.5 425 67.3
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 1.0e-169 600.5 418 68.7
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 2.2e-169 599.4 425 67.1
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 3.8e-169 598.6 426 67.4
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 3.8e-169 598.6 423 66.7
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 5.0e-169 598.2 423 67.4
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 5.0e-169 598.2 414 66.9
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 6.5e-169 597.8 414 66.9
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 8.5e-169 597.4 425 67.1
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 8.5e-169 597.4 425 65.2
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 9.4e-168 594.0 434 67.5
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 9.4e-168 594.0 425 64.7
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.2e-167 593.6 418 67.5
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-167 593.2 414 66.2
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.7e-167 592.4 416 67.5
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 4.6e-167 591.7 426 66.2
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 3.9e-166 588.6 415 66.7
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-165 586.3 414 66.7
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.9e-165 586.3 414 66.7
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 2.5e-165 585.9 424 65.1
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.3e-165 585.1 427 64.9
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.3e-165 585.1 427 64.9
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 7.4e-165 584.3 417 66.7
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 7.4e-165 584.3 447 63.5
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 2.8e-164 582.4 429 63.2
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.8e-163 579.7 415 65.5
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.8e-163 579.7 426 64.8
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 9.1e-163 577.4 425 65.6
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.5e-162 576.6 415 65.1
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.9e-161 572.4 429 63.6
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.4e-160 570.1 428 62.6
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.4e-160 567.4 430 63.7
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.7e-159 565.1 420 65.5
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.0e-157 559.7 430 65.1
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 2.2e-156 556.2 426 62.7
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.8e-156 555.8 433 61.2
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.8e-155 553.1 422 61.4
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.1e-155 552.4 422 61.1
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.0e-153 547.4 407 64.9
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.8e-150 536.6 414 62.3
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.9e-150 535.4 425 60.7
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.3e-148 528.1 434 59.0
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.4e-147 526.9 418 60.3
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 7.0e-147 524.6 432 56.9
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 2.6e-146 522.7 411 59.9
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.1e-144 517.3 417 60.0
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 2.5e-144 516.2 431 55.0
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 3.2e-144 515.8 356 70.5
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.6e-143 513.5 431 54.5
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.3e-142 509.6 426 59.9
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.5e-136 490.3 453 53.6
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 6.1e-135 485.0 421 56.3
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.6e-130 470.3 395 55.4
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 7.8e-122 441.4 308 67.9
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.9e-120 436.8 404 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 1.3e-116 424.1 432 49.3
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.1e-110 404.4 296 63.2
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.0e-110 402.5 429 50.8
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 6.4e-108 395.2 429 50.3
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 4.1e-107 392.5 412 47.6
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.6e-106 389.0 264 68.6
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 9.5e-104 381.3 411 46.2
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 2.3e-102 376.7 414 44.2
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-99 365.9 346 50.9
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 3.3e-88 329.7 413 40.9
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.1e-86 324.7 225 67.1
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 3.4e-85 319.7 261 65.1
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.3e-80 302.8 291 50.5
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.4e-78 297.0 239 58.6
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 8.7e-57 225.3 139 74.1
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 9.0e-54 215.3 157 65.6
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.2e-51 206.8 139 64.0
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.6e-50 203.4 317 38.2
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.1e-46 189.9 130 61.5
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 3.4e-45 186.8 113 71.7
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-40 171.4 143 59.4
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-37 161.0 127 63.8
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.0e-36 158.7 183 48.6
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-35 155.2 195 46.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.4e-32 143.3 406 25.9
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 3.5e-29 133.7 142 50.0
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-22 112.1 79 68.4
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 7.7e-21 105.9 84 59.5
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.9e-20 104.0 68 69.1
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 8.5e-20 102.4 71 71.8
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 3.6e-18 97.1 91 57.1
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 4.7e-18 96.7 79 58.2
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-17 94.4 86 57.0
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 5.2e-17 93.2 93 48.4
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.4e-14 83.2 75 49.3
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-13 81.6 66 60.6
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-13 81.3 60 66.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.5e-13 80.5 57 68.4
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.2e-11 73.6 67 58.2
SEGI_15796 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.4e-06 58.5 58 53.4


User provided reference genes

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