Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 5.8e-84 314.3 174 100.0
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.4e-48 196.8 171 63.2
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.4e-48 196.8 153 71.9
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 8.5e-43 177.6 131 69.5
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 2.5e-42 176.0 153 63.4
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 4.2e-42 175.3 142 65.5
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 9.4e-42 174.1 153 64.1
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.2e-41 173.7 174 58.6
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.1e-41 172.9 172 63.4
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.7e-41 172.6 145 64.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.6e-41 172.2 145 64.8
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.7e-41 171.8 174 60.9
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 4.7e-41 171.8 124 73.4
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 6.1e-41 171.4 145 64.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 8.0e-41 171.0 134 67.2
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.8e-40 169.9 146 62.3
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.8e-40 169.9 123 71.5
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 1.8e-40 169.9 148 62.2
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.8e-40 169.9 145 62.8
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 4.0e-40 168.7 149 62.4
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 5.2e-40 168.3 177 55.9
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 1.5e-39 166.8 126 71.4
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 3.3e-39 165.6 168 56.5
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 7.5e-39 164.5 146 61.0
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 1.3e-38 163.7 145 63.4
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.7e-38 163.3 147 61.9
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 2.2e-38 162.9 185 56.2
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 2.2e-38 162.9 129 64.3
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.8e-38 162.5 172 52.3
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 4.8e-38 161.8 177 53.7
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.1e-37 160.6 143 61.5
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.4e-37 160.2 129 64.3
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.4e-37 160.2 128 64.1
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.4e-37 160.2 128 64.1
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.4e-37 160.2 144 60.4
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 2.4e-37 159.5 171 54.4
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 2.4e-37 159.5 173 57.2
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 4.1e-37 158.7 145 60.7
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 4.1e-37 158.7 145 60.7
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 5.3e-37 158.3 148 61.5
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 9.1e-37 157.5 112 73.2
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 9.1e-37 157.5 124 65.3
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.6e-36 156.8 145 60.0
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 4.5e-36 155.2 176 51.7
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 5.9e-36 154.8 141 61.0
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 5.9e-36 154.8 147 58.5
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 7.7e-36 154.5 176 51.1
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 7.7e-36 154.5 133 64.7
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 7.7e-36 154.5 133 64.7
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.3e-35 153.7 145 56.6
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.3e-35 153.7 150 56.7
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.7e-35 153.3 144 56.9
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 2.2e-35 152.9 142 62.0
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 5.0e-35 151.8 150 56.7
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 5.5e-34 148.3 172 50.6
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 5.5e-34 148.3 171 49.7
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 5.5e-34 148.3 147 56.5
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 7.2e-34 147.9 149 56.4
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 7.2e-34 147.9 147 57.8
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 9.4e-34 147.5 149 57.7
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 1.2e-33 147.1 155 52.3
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 2.1e-33 146.4 122 60.7
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 2.1e-33 146.4 110 72.7
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 4.7e-33 145.2 108 67.6
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 8.0e-33 144.4 175 49.7
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.4e-32 143.7 145 55.2
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 2.3e-32 142.9 124 60.5
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 3.0e-32 142.5 139 56.1
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 3.0e-32 142.5 139 56.1
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.0e-32 142.1 169 50.9
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 4.0e-32 142.1 145 57.2
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 5.2e-32 141.7 115 68.7
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 5.2e-32 141.7 174 49.4
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 6.8e-32 141.4 176 48.9
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 8.8e-32 141.0 148 53.4
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.2e-31 140.6 133 58.6
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 1.2e-31 140.6 182 46.7
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-31 140.2 200 45.5
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 1.5e-31 140.2 147 53.1
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 2.0e-31 139.8 153 55.6
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 2.0e-31 139.8 147 53.1
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 3.4e-31 139.0 164 51.2
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 3.4e-31 139.0 176 48.3
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.4e-31 138.7 180 48.9
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 5.7e-31 138.3 135 57.0
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 5.7e-31 138.3 130 63.8
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 7.5e-31 137.9 170 48.2
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 7.5e-31 137.9 173 47.4
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 7.5e-31 137.9 117 57.3
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 7.5e-31 137.9 117 57.3
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 7.5e-31 137.9 117 57.3
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 7.5e-31 137.9 117 57.3
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 7.5e-31 137.9 117 57.3
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.8e-31 137.5 140 55.7
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.3e-30 137.1 140 55.0
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.3e-30 137.1 117 57.3
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 2.8e-30 136.0 144 54.9
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 2.8e-30 136.0 139 51.1
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 2.8e-30 136.0 180 47.2
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 3.7e-30 135.6 133 57.1
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 4.8e-30 135.2 140 56.4
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 6.3e-30 134.8 140 55.7
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 6.3e-30 134.8 140 55.7
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.1e-29 134.0 139 56.1
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.8e-29 133.3 142 51.4
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.8e-29 133.3 142 51.4
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 2.4e-29 132.9 146 52.1
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.1e-29 132.5 125 57.6
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 4.1e-29 132.1 140 56.4
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 9.1e-29 131.0 148 52.7
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 9.1e-29 131.0 137 56.2
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.2e-28 130.6 100 68.0
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 2.7e-28 129.4 204 45.6
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 2.7e-28 129.4 131 52.7
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 4.5e-28 128.6 139 51.8
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 5.9e-28 128.3 173 45.7
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 2.9e-27 125.9 169 47.3
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.8e-27 125.6 125 54.4
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 1.1e-26 124.0 137 53.3
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.8e-25 119.4 144 51.4
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 3.6e-25 119.0 164 45.7
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 5.7e-23 111.7 127 49.6
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.3e-22 110.5 174 42.5
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 4.9e-22 108.6 163 41.7
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 8.3e-22 107.8 136 49.3
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 2.9e-19 99.4 136 47.1
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 8.6e-19 97.8 88 59.1
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.9e-18 96.7 158 41.1
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 4.7e-17 92.0 127 45.7
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 1.5e-15 87.0 155 38.1
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.2e-12 77.4 179 33.0
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 2.0e-12 76.6 134 34.3
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 3.5e-12 75.9 64 56.2
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 1.7e-11 73.6 109 44.0
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.1e-10 70.9 115 38.3
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 7.3e-10 68.2 118 43.2
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 3.6e-09 65.9 133 33.1
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 4.7e-09 65.5 84 47.6
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.2e-09 65.1 135 38.5
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 1.2e-07 60.8 38 65.8
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 6.4e-06 55.1 85 43.5
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 8.3e-06 54.7 161 31.7


User provided reference genes

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