Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g04420 Coffea canephora HOM05D006612 ORTHO05D009014 1.5e-80 302.8 149 100.0
Cc08_g02920 Coffea canephora HOM05D006612 ORTHO05D009014 2.4e-62 242.3 130 90.8
Cc09_g02230 Coffea canephora HOM05D006612 ORTHO05D009014 1.1e-25 120.6 128 47.7
Cc07_g18580 Coffea canephora HOM05D006612 ORTHO05D009014 1.3e-23 113.6 128 40.6
SGA_v2.0_scaffold67G22672 Striga asiatica HOM05D006612 ORTHO05D009014 1.9e-22 109.8 136 43.4
Lsat_1_v5_gn_7_34501 Lactuca sativa HOM05D006612 ORTHO05D009014 3.2e-22 109.0 143 39.9
Cc04_g13910 Coffea canephora HOM05D006612 ORTHO05D009014 2.3e-20 102.8 128 38.3
SGA_v2.0_scaffold10G05328 Striga asiatica HOM05D006612 ORTHO05D009014 1.9e-19 99.8 118 44.9
SGA_v2.0_scaffold319G48529 Striga asiatica HOM05D006612 ORTHO05D009014 3.3e-19 99.0 145 33.8
SGA_v2.0_scaffold289G47248 Striga asiatica HOM05D006612 ORTHO05D009014 4.8e-18 95.1 118 38.1
SGA_v2.0_scaffold3G01561 Striga asiatica HOM05D006612 ORTHO05D009014 8.1e-18 94.4 118 38.1
Cc02_g03800 Coffea canephora HOM05D006612 ORTHO05D009014 1.4e-17 93.6 129 33.3
Lsat_1_v5_gn_1_29400 Lactuca sativa HOM05D006612 ORTHO05D009014 1.4e-17 93.6 110 41.8
SGA_v2.0_scaffold33G13376 Striga asiatica HOM05D006612 ORTHO05D009014 1.8e-17 93.2 107 41.1
SGA_v2.0_scaffold90G27630 Striga asiatica HOM05D006612 ORTHO05D009014 6.9e-17 91.3 114 42.1
SGA_v2.0_scaffold181G39686 Striga asiatica HOM05D006612 ORTHO05D009014 9.0e-17 90.9 110 37.3
SGA_v2.0_scaffold30G12440 Striga asiatica HOM05D006612 ORTHO05D009014 2.0e-16 89.7 128 38.3
Lsat_1_v5_gn_2_22101 Lactuca sativa HOM05D006612 ORTHO05D009014 5.8e-16 88.2 85 50.6
SGA_v2.0_scaffold478G52233 Striga asiatica HOM05D006612 ORTHO05D009014 4.9e-15 85.1 119 36.1
SGA_v2.0_scaffold169G38616 Striga asiatica HOM05D006612 ORTHO05D009014 4.2e-14 82.0 121 33.9
SGA_v2.0_scaffold109G31149 Striga asiatica HOM05D006612 ORTHO05D009014 2.7e-13 79.3 110 37.3
SGA_v2.0_scaffold37G14810 Striga asiatica HOM05D006612 ORTHO05D009014 4.6e-13 78.6 116 33.6
SGA_v2.0_scaffold83G26370 Striga asiatica HOM05D006612 ORTHO05D009014 4.6e-13 78.6 116 33.6
SGA_v2.0_scaffold122G33346 Striga asiatica HOM05D031284 ORTHO05D009014 2.3e-12 76.3 83 43.4
SGA_v2.0_scaffold1973G54063 Striga asiatica HOM05D006612 ORTHO05D009014 2.3e-12 76.3 83 43.4
SGA_v2.0_scaffold19G08816 Striga asiatica HOM05D006612 ORTHO05D009014 2.3e-12 76.3 118 36.4
SGA_v2.0_scaffold141G35579 Striga asiatica HOM05D006612 ORTHO05D009014 3.9e-12 75.5 80 41.2
SGA_v2.0_scaffold87G27099 Striga asiatica HOM05D031284 ORTHO05D009014 5.1e-12 75.1 83 43.4
SGA_v2.0_scaffold27G11559 Striga asiatica HOM05D006612 ORTHO05D009014 4.3e-11 72.0 82 43.9
Cc00_g13000 Coffea canephora HOM05D006612 ORTHO05D009014 5.6e-11 71.6 77 44.2
Cc10_g10270 Coffea canephora HOM05D017605 ORTHO05D009014 7.4e-11 71.2 119 31.1
Atru.chr8.1160 Acer truncatum HOM05D006612 ORTHO05D010384 1.3e-10 70.5 126 27.0
Cc08_g06650 Coffea canephora HOM05D006612 ORTHO05D009014 1.6e-10 70.1 73 49.3
SGA_v2.0_scaffold35G14178 Striga asiatica HOM05D006612 ORTHO05D009014 2.8e-10 69.3 108 32.4
CANSAT01G2695 Cannabis sativa HOM05D008860 ORTHO05D010384 4.0e-09 65.5 140 26.4
Atru.chr4.2122 Acer truncatum HOM05D002751 ORTHO05D003005 5.3e-09 65.1 125 28.8
SGA_v2.0_scaffold46G17404 Striga asiatica HOM05D006612 ORTHO05D009014 5.3e-09 65.1 80 35.0
Rhsim08G0049800 Rhododendron simsii HOM05D023805 ORTHO05D010384 2.0e-08 63.2 138 28.3
CANSAT56G0625 Cannabis sativa HOM05D008860 ORTHO05D010619 2.6e-08 62.8 136 27.2
SGA_v2.0_scaffold116G32264 Striga asiatica HOM05D006612 ORTHO05D009014 2.6e-08 62.8 95 38.9
Oeu027742.1 Olea europaea HOM05D008860 ORTHO05D010619 5.8e-08 61.6 126 27.0
Dinv10520 Davidia involucrata HOM05D000824 ORTHO05D010384 9.9e-08 60.8 124 29.8
SGA_v2.0_scaffold346G49531 Striga asiatica HOM05D006612 ORTHO05D009014 2.2e-07 59.7 132 26.5
Cc07_g03400 Coffea canephora HOM05D006612 ORTHO05D009014 2.9e-07 59.3 135 34.1
SGA_v2.0_scaffold188G40334 Striga asiatica HOM05D006612 ORTHO05D009014 4.9e-07 58.5 92 30.4
Dinv06234 Davidia involucrata HOM05D006612 ORTHO05D010384 1.1e-06 57.4 126 27.8
CANSAT35G0072 Cannabis sativa HOM05D006612 ORTHO05D010384 1.9e-06 56.6 122 26.2
Nitab4.5_0004971g0010 Nicotiana tabacum HOM05D002261 ORTHO05D002334 1.9e-06 56.6 147 25.2
SGA_v2.0_scaffold2648G54169 Striga asiatica HOM05D006612 ORTHO05D009014 2.4e-06 56.2 75 33.3
Dinv30925 Davidia involucrata HOM05D000824 ORTHO05D010384 3.2e-06 55.8 126 23.8
Dinv41987 Davidia involucrata HOM05D000824 ORTHO05D010384 3.2e-06 55.8 126 23.8
CANSAT80G1395 Cannabis sativa HOM05D008860 ORTHO05D010619 4.2e-06 55.5 122 24.6
Cc09_g07530 Coffea canephora HOM05D006612 ORTHO05D009014 4.2e-06 55.5 92 31.5
Dinv19531 Davidia involucrata HOM05D000824 ORTHO05D010384 4.2e-06 55.5 126 23.8
Dinv08250 Davidia involucrata HOM05D000824 ORTHO05D010384 5.5e-06 55.1 124 26.6
Oeu030932.1 Olea europaea HOM05D019936 ORTHO05D010619 7.1e-06 54.7 115 32.2
Actinidia03272 Actinidia chinensis HOM05D006612 ORTHO05D010619 9.3e-06 54.3 110 27.3
SGA_v2.0_scaffold1G00207 Striga asiatica HOM05D006612 ORTHO05D009014 9.3e-06 54.3 79 30.4


User provided reference genes

Program Settings