Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g04140 Coffea canephora HOM05D003637 ORTHO05D004175 2.7e-65 251.9 130 100.0
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 6.2e-22 107.8 117 56.4
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 8.1e-22 107.5 118 55.9
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 1.8e-21 106.3 117 55.6
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 6.8e-21 104.4 117 54.7
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 6.8e-21 104.4 117 54.7
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 6.8e-21 104.4 117 53.8
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 6.8e-21 104.4 117 54.7
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 6.8e-21 104.4 117 54.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 6.8e-21 104.4 117 54.7
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 8.9e-21 104.0 117 55.6
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 2.0e-20 102.8 117 54.7
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 2.0e-20 102.8 117 54.7
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 2.0e-20 102.8 117 54.7
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 2.0e-20 102.8 117 53.8
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 2.6e-20 102.4 117 54.7
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 3.4e-20 102.1 117 54.7
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 4.4e-20 101.7 117 53.0
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 5.8e-20 101.3 117 53.0
GSVIVG01036287001 Vitis vinifera HOM05D003637 ORTHO05D004175 5.8e-20 101.3 117 54.7
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 7.6e-20 100.9 117 53.8
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 7.6e-20 100.9 117 54.7
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 9.9e-20 100.5 119 50.4
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 9.9e-20 100.5 117 53.0
TAR374G1272 Trochodendron aralioides HOM05D003637 ORTHO05D004175 9.9e-20 100.5 114 54.4
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 1.3e-19 100.1 117 52.1
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.3e-19 100.1 117 53.8
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 1.3e-19 100.1 117 53.0
Oeu004354.1 Olea europaea HOM05D003637 ORTHO05D004175 1.3e-19 100.1 117 53.8
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 1.3e-19 100.1 117 53.0
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 1.3e-19 100.1 117 52.1
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 52.1
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 1.7e-19 99.8 117 53.0
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 2.2e-19 99.4 117 53.0
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 2.2e-19 99.4 117 52.1
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 2.2e-19 99.4 117 52.1
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 2.2e-19 99.4 117 52.1
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 2.2e-19 99.4 117 52.1
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 2.9e-19 99.0 117 52.1
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 2.9e-19 99.0 117 51.3
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.9e-19 99.0 117 51.3
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.9e-19 99.0 117 51.3
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.9e-19 99.0 117 51.3
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 2.9e-19 99.0 117 52.1
HPP92_000901 Vanilla planifolia HOM05D003637 ORTHO05D004175 2.9e-19 99.0 115 52.2
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 3.8e-19 98.6 117 53.0
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 3.8e-19 98.6 118 52.5
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 8.4e-19 97.4 116 52.6
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 1.1e-18 97.1 117 52.1
Medtr1g057880 Medicago truncatula HOM05D003637 ORTHO05D004175 1.4e-18 96.7 114 52.6
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 1.4e-18 96.7 117 50.4
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 1.9e-18 96.3 117 51.3
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 1.9e-18 96.3 117 52.1
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 2.4e-18 95.9 117 51.3
Nitab4.5_0002446g0080 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.4e-18 95.9 115 52.2
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 3.2e-18 95.5 116 52.6
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 4.2e-18 95.1 117 49.6
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 4.2e-18 95.1 117 53.8
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 5.4e-18 94.7 117 49.6
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 5.4e-18 94.7 117 51.3
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 7.1e-18 94.4 117 49.6
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 7.1e-18 94.4 119 50.4
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 1.6e-17 93.2 114 51.8
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 1.6e-17 93.2 117 49.6
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 1.6e-17 93.2 115 48.7
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 2.7e-17 92.4 118 50.0
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 3.5e-17 92.0 117 49.6
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 4.6e-17 91.7 119 49.6
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 4.6e-17 91.7 115 47.8
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 7.8e-17 90.9 118 51.7
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 7.8e-17 90.9 118 46.6
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 1.0e-16 90.5 117 47.9
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 1.7e-16 89.7 118 49.2
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 3.9e-16 88.6 117 47.0
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 3.9e-16 88.6 118 50.8
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 8.7e-16 87.4 118 47.5
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.9e-15 86.3 106 50.9
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 4.3e-15 85.1 119 48.7
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 5.6e-15 84.7 117 48.7
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 5.6e-15 84.7 116 47.4
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 5.6e-15 84.7 117 48.7
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 5.6e-15 84.7 117 48.7
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 5.6e-15 84.7 117 48.7
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 5.6e-15 84.7 117 48.7
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 5.6e-15 84.7 117 48.7
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 9.6e-15 84.0 120 45.8
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 9.6e-15 84.0 117 46.2
CBR_g19630 Chara braunii HOM05D003637 ORTHO05D004175 9.6e-15 84.0 105 50.5
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 9.6e-15 84.0 119 47.9
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 1.3e-14 83.6 116 48.3
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 1.6e-14 83.2 117 46.2
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 1.6e-14 83.2 117 46.2
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 4.8e-14 81.6 116 46.6
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 4.8e-14 81.6 116 46.6
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 4.8e-14 81.6 116 46.6
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 4.8e-14 81.6 106 48.1
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 6.2e-14 81.3 120 44.2
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 8.1e-14 80.9 116 46.6
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 1.1e-13 80.5 118 45.8
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 1.4e-13 80.1 120 44.2
BNapus_Darmor_BZH_scaffold_99p00050 Brassica napus HOM05D003637 ORTHO05D004175 1.4e-13 80.1 120 44.2
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.8e-13 79.7 110 47.3
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 6.9e-13 77.8 110 46.4
Medtr1g022010 Medicago truncatula HOM05D003637 ORTHO05D004175 1.2e-12 77.0 125 44.8
PSO210G6366 Papaver somniferum HOM05D003637 ORTHO05D004175 1.5e-12 76.6 117 43.6
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 2.0e-12 76.3 118 44.9
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 2.6e-12 75.9 117 42.7
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 3.4e-12 75.5 108 46.3
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 5.8e-12 74.7 107 46.7
Medtr5g091860 Medicago truncatula HOM05D003637 ORTHO05D004175 3.2e-10 68.9 84 51.2
HanXRQChr01g0009571 Helianthus annuus HOM05D003637 ORTHO05D004175 2.1e-09 66.2 119 40.3
Cfa022007 Carpinus fangiana HOM05D003637 ORTHO05D004175 3.5e-09 65.5 111 38.7
SEGI_19033 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 1.1e-07 60.5 55 58.2
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 1.9e-07 59.7 31 93.5
vmacro18731 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 3.3e-07 58.9 31 90.3
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 7.3e-07 57.8 32 87.5
Oeu015342.1 Olea europaea HOM05D003637 ORTHO05D004175 9.6e-07 57.4 32 87.5
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.6e-06 56.6 31 83.9
CDE10G0032 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 1.6e-06 56.6 29 89.7
COL.COLO4_37592 Corchorus olitorius HOM05D003637 ORTHO05D004175 1.6e-06 56.6 51 58.8
Haze_10274 Corylus avellana HOM05D000058 ORTHO05D004175 1.6e-06 56.6 31 83.9
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 2.8e-06 55.8 31 83.9
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.8e-06 55.8 29 89.7
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.8e-06 55.8 29 89.7
SEGI_09615 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 2.8e-06 55.8 30 83.3
Haze_27378 Corylus avellana HOM05D003637 ORTHO05D004175 6.2e-06 54.7 106 35.8
SEGI_30050 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 8.1e-06 54.3 29 82.8


User provided reference genes

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