Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g03890 Coffea canephora HOM05D006062 ORTHO05D007613 7.0e-84 313.9 161 100.0
Cc02_g00440 Coffea canephora HOM05D006062 ORTHO05D007613 2.6e-46 189.1 207 57.5
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 1.9e-36 156.4 204 51.0
Solyc03g096850.4 Solanum lycopersicum HOM05D006062 ORTHO05D007613 4.2e-36 155.2 208 51.9
Sopen03g027600 Solanum pennellii HOM05D006062 ORTHO05D007613 4.2e-36 155.2 208 51.9
PGSC0003DMG400000569 Solanum tuberosum HOM05D006062 ORTHO05D007613 2.1e-35 152.9 208 51.4
COL.COLO4_08912 Corchorus olitorius HOM05D006062 ORTHO05D007613 1.8e-34 149.8 185 52.4
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 1.8e-34 149.8 197 50.8
GSVIVG01024454001 Vitis vinifera HOM05D006062 ORTHO05D007613 1.8e-34 149.8 205 50.2
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 6.7e-34 147.9 157 59.2
Rhsim09G0211900 Rhododendron simsii HOM05D006062 ORTHO05D007613 6.7e-34 147.9 200 51.0
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 8.7e-34 147.5 196 53.1
CSS0001214 Camellia sinensis var. sinensis HOM05D006062 ORTHO05D007613 1.1e-33 147.1 206 49.0
CAN.G303.70 Capsicum annuum HOM05D006062 ORTHO05D007613 2.5e-33 146.0 205 48.3
Potri.019G042600 Populus trichocarpa HOM05D006062 ORTHO05D007613 5.7e-33 144.8 205 47.8
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 1.6e-32 143.3 205 49.3
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 2.8e-32 142.5 200 48.0
Carub.0006s1536 Capsella rubella HOM05D006062 ORTHO05D007613 2.8e-32 142.5 123 64.2
CARHR196050 Cardamine hirsuta HOM05D006062 ORTHO05D007613 2.8e-32 142.5 123 63.4
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 2.8e-32 142.5 123 64.2
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.8e-32 142.5 203 48.3
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 3.7e-32 142.1 89 82.0
Sp6g27050 Schrenkiella parvula HOM05D006062 ORTHO05D007613 3.7e-32 142.1 123 63.4
Aa31LG11G12480 Aethionema arabicum HOM05D006062 ORTHO05D007613 4.8e-32 141.7 123 64.2
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 4.8e-32 141.7 122 63.9
CDE02G0118 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 4.8e-32 141.7 105 71.4
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 4.8e-32 141.7 205 49.3
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 4.8e-32 141.7 205 49.8
SGA_v2.0_scaffold18G08502 Striga asiatica HOM05D006062 ORTHO05D007613 4.8e-32 141.7 201 49.3
Actinidia18696 Actinidia chinensis HOM05D006062 ORTHO05D007613 6.3e-32 141.4 196 48.5
BcaNung00424 Brassica carinata HOM05D006062 ORTHO05D007613 6.3e-32 141.4 123 63.4
Nn1g02035 Nelumbo nucifera HOM05D006062 ORTHO05D007613 6.3e-32 141.4 105 72.4
BraA02t05361Z Brassica rapa HOM05D006062 ORTHO05D007613 8.2e-32 141.0 124 62.9
Lj3A890T59 Lonicera japonica HOM05D006062 ORTHO05D007613 8.2e-32 141.0 204 49.0
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 1.1e-31 140.6 202 50.5
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 1.4e-31 140.2 204 48.0
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 1.4e-31 140.2 105 70.5
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 1.8e-31 139.8 105 70.5
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 1.8e-31 139.8 203 47.8
C09p60030 Brassica napus HOM05D006062 ORTHO05D007613 2.4e-31 139.4 124 62.1
AL6G28220 Arabidopsis lyrata HOM05D006062 ORTHO05D007613 3.1e-31 139.0 105 70.5
Mapoly0041s0075 Marchantia polymorpha HOM05D006062 ORTHO05D007613 3.1e-31 139.0 117 63.2
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 3.1e-31 139.0 90 77.8
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 3.1e-31 139.0 137 59.9
ClCG01G005020 Citrullus lanatus HOM05D006062 ORTHO05D007613 4.1e-31 138.7 202 47.5
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 4.1e-31 138.7 122 63.1
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 4.1e-31 138.7 124 61.3
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 4.1e-31 138.7 105 70.5
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 5.3e-31 138.3 105 70.5
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 5.3e-31 138.3 124 61.3
Psat2g187840 Pisum sativum HOM05D006062 ORTHO05D007613 5.3e-31 138.3 105 70.5
TPR.G37875 Trifolium pratense HOM05D006062 ORTHO05D007613 5.3e-31 138.3 89 79.8
BcaC04g18827 Brassica carinata HOM05D006062 ORTHO05D007613 6.9e-31 137.9 91 78.0
Migut.F00106 Erythranthe guttata HOM05D006062 ORTHO05D007613 6.9e-31 137.9 200 48.5
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 6.9e-31 137.9 127 60.6
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 6.9e-31 137.9 105 70.5
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 9.0e-31 137.5 105 70.5
CiPaw.06G020400 Carya illinoinensis HOM05D006062 ORTHO05D007613 9.0e-31 137.5 201 47.3
BcaC03g18534 Brassica carinata HOM05D006062 ORTHO05D007613 1.2e-30 137.1 160 54.4
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 1.2e-30 137.1 105 68.6
Ah.13g071240 Amaranthus hybridus HOM05D006062 ORTHO05D007613 1.5e-30 136.7 198 47.0
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 1.5e-30 136.7 150 54.0
A02p03960 Brassica napus HOM05D006062 ORTHO05D007613 1.5e-30 136.7 163 52.8
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 1.5e-30 136.7 141 56.7
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 1.5e-30 136.7 137 59.1
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 1.5e-30 136.7 124 61.3
C02p08780 Brassica napus HOM05D006062 ORTHO05D007613 2.0e-30 136.3 163 53.4
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 2.0e-30 136.3 105 69.5
BolC2t06792H Brassica oleracea HOM05D006062 ORTHO05D007613 2.6e-30 136.0 161 53.4
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 2.6e-30 136.0 122 62.3
RcHm_v2.0_Chr1g0383771 Rosa chinensis HOM05D006062 ORTHO05D007613 2.6e-30 136.0 105 68.6
Glyma.11G012700 Glycine max HOM05D006062 ORTHO05D007613 3.4e-30 135.6 137 57.7
Medtr5g008050 Medicago truncatula HOM05D006062 ORTHO05D007613 4.5e-30 135.2 105 69.5
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 4.5e-30 135.2 105 68.6
BolC9t58838H Brassica oleracea HOM05D006062 ORTHO05D007613 5.9e-30 134.8 124 62.1
AUR62005918 Chenopodium quinoa HOM05D006062 ORTHO05D007613 5.9e-30 134.8 195 47.7
Hma1.2p1_0758F.1_g213550 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 5.9e-30 134.8 203 47.3
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 5.9e-30 134.8 202 50.0
TAR375G0226 Trochodendron aralioides HOM05D006062 ORTHO05D007613 1.3e-29 133.7 124 59.7
Sc25g0001120 Simmondsia chinensis HOM05D006062 ORTHO05D007613 1.7e-29 133.3 197 47.7
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 2.2e-29 132.9 204 48.5
Hma1.2p1_0758F.1_g213560 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 2.2e-29 132.9 151 54.3
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 2.9e-29 132.5 153 52.3
MBI04_g27273_MAGBIO Magnolia biondii HOM05D006062 ORTHO05D007613 2.9e-29 132.5 120 60.8
AT5G17170 Arabidopsis thaliana HOM05D006062 ORTHO05D007613 3.8e-29 132.1 160 52.5
FvH4_7g33550 Fragaria vesca HOM05D006062 ORTHO05D007613 3.8e-29 132.1 148 55.4
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 3.8e-29 132.1 105 70.5
FAN01G1199 Fragaria x ananassa HOM05D006062 ORTHO05D007613 5.0e-29 131.7 149 55.0
A10p22220 Brassica napus HOM05D006062 ORTHO05D007613 8.5e-29 131.0 102 69.6
BraA10t44281Z Brassica rapa HOM05D006062 ORTHO05D007613 8.5e-29 131.0 102 69.6
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 8.5e-29 131.0 105 66.7
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 8.5e-29 131.0 105 66.7
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 8.5e-29 131.0 105 66.7
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 8.5e-29 131.0 105 66.7
Sabra19G0053200 Salix brachista HOM05D006062 ORTHO05D007613 3.2e-28 129.0 228 42.1
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 5.5e-28 128.3 152 52.0
FAN10G2030 Fragaria x ananassa HOM05D006062 ORTHO05D007613 5.5e-28 128.3 158 52.5
FAN10G3926 Fragaria x ananassa HOM05D006062 ORTHO05D007613 5.5e-28 128.3 158 52.5
Pp3c10_15730 Physcomitrium patens HOM05D006062 ORTHO05D007613 2.7e-27 125.9 165 50.9
Ca_24458_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 6.7e-26 121.3 111 61.3
Ca_24464_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 6.7e-26 121.3 111 61.3
Peaxi162Scf01650g00050 Petunia axillaris HOM05D006062 ORTHO05D007613 1.3e-24 117.1 145 53.8
TAR375G0371 Trochodendron aralioides HOM05D006062 ORTHO05D007613 3.1e-23 112.5 110 58.2
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 5.3e-23 111.7 90 70.0
unitig_52.g17697 Utricularia gibba HOM05D006062 ORTHO05D007613 1.2e-22 110.5 148 49.3
Oeu033092.1 Olea europaea HOM05D006062 ORTHO05D007613 1.9e-20 103.2 56 89.3
Dinv29176 Davidia involucrata HOM05D006062 ORTHO05D007613 2.5e-20 102.8 172 47.1
EL10Ac3g05103 Beta vulgaris HOM05D006062 ORTHO05D007613 3.2e-20 102.4 173 44.5
Haze_00586 Corylus avellana HOM05D006062 ORTHO05D007613 7.2e-20 101.3 73 71.2
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 7.2e-20 101.3 83 66.3
AagrBONN_evm.TU.Sc2ySwM_117.4047 Anthoceros agrestis HOM05D006062 ORTHO05D007613 9.4e-20 100.9 83 60.2
Lsat_1_v5_gn_8_3801 Lactuca sativa HOM05D006062 ORTHO05D007613 2.1e-19 99.8 92 59.8
AUR62028145 Chenopodium quinoa HOM05D006062 ORTHO05D007613 3.6e-19 99.0 167 46.1
CBR_g41688 Chara braunii HOM05D006062 ORTHO05D007613 5.1e-18 95.1 55 80.0
Nitab4.5_0002302g0030 Nicotiana tabacum HOM05D006062 ORTHO05D007613 1.5e-17 93.6 152 46.1
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 1.3e-16 90.5 68 72.1
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 4.8e-16 88.6 84 54.8
Duzib187G0879 Durio zibethinus HOM05D006062 ORTHO05D007613 1.4e-15 87.0 88 51.1
MD01G1233200 Malus domestica HOM05D006062 ORTHO05D007613 3.1e-15 85.9 116 46.6
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 1.2e-14 84.0 141 44.7
PRCOL_00001509 Prasinoderma coloniale HOM05D006062 ORTHO05D007613 2.5e-12 76.3 101 44.6
CDE02G3588 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 1.7e-08 63.5 155 38.7


User provided reference genes

Program Settings