Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.9e-196 689.1 371 100.0
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.1e-124 450.7 374 66.8
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 5.7e-121 438.3 423 63.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.3e-120 437.2 368 68.5
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 2.2e-120 436.4 336 71.4
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 5.9e-118 428.3 350 70.3
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.7e-118 427.9 419 62.5
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.1e-116 424.1 472 55.7
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.1e-116 424.1 397 63.2
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.9e-116 423.3 384 68.0
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.9e-116 423.3 378 67.7
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 3.2e-116 422.5 428 60.5
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.2e-116 421.4 397 63.0
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 7.2e-116 421.4 397 63.0
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.2e-115 420.6 379 67.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.1e-115 419.9 372 65.6
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 4.7e-115 418.7 359 67.1
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 8.0e-115 417.9 359 68.0
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.4e-114 417.2 375 64.5
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.2e-113 414.1 365 66.6
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.5e-113 413.7 383 63.2
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 4.4e-113 412.1 467 55.0
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 7.5e-113 411.4 323 69.7
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 9.8e-113 411.0 387 63.0
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-111 407.1 358 66.8
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.6e-110 403.7 354 67.5
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.6e-110 403.7 375 63.5
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 2.7e-110 402.9 375 65.1
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.7e-110 402.9 499 51.9
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.0e-109 401.0 363 65.3
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.3e-109 400.6 499 51.5
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 2.2e-109 399.8 401 60.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 3.8e-109 399.1 371 62.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 7.2e-108 394.8 333 70.3
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.6e-107 393.7 359 63.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 4.0e-106 389.0 378 65.1
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.2e-105 387.5 382 61.8
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 4.4e-105 385.6 389 59.4
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 7.5e-105 384.8 388 59.5
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 3.7e-104 382.5 388 58.5
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-103 380.9 387 59.4
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.4e-103 379.8 388 59.8
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.1e-103 379.4 328 65.9
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 4.1e-103 379.0 413 57.6
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.4e-103 378.6 389 60.2
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.5e-102 375.9 340 64.4
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.5e-102 375.6 390 58.2
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 5.9e-102 375.2 391 61.6
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 7.7e-102 374.8 369 60.4
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 7.7e-102 374.8 368 62.0
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.3e-101 374.0 390 59.5
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.3e-101 374.0 390 57.9
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-101 373.6 387 58.4
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 2.3e-101 373.2 347 62.8
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.5e-100 370.5 401 59.9
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.5e-100 370.5 387 58.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.5e-100 370.5 399 59.4
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-98 364.0 300 69.3
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 3.0e-98 362.8 347 62.2
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 5.2e-98 362.1 391 58.3
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 5.2e-98 362.1 348 61.5
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 6.8e-98 361.7 388 56.2
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 6.8e-98 361.7 388 56.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.3e-96 357.5 380 60.3
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.3e-96 357.5 468 52.1
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.7e-96 357.1 405 55.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 3.7e-96 355.9 433 56.6
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.4e-96 355.1 405 55.1
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 8.3e-96 354.8 383 58.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.6e-94 350.5 398 56.5
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 2.0e-94 350.1 378 58.5
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 7.8e-94 348.2 434 52.8
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 7.8e-94 348.2 381 57.0
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.3e-93 347.4 341 62.5
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.3e-93 347.4 403 54.3
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 6.6e-93 345.1 400 56.2
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 8.6e-93 344.7 434 53.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 9.5e-92 341.3 414 52.9
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 8.9e-90 334.7 390 55.6
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 7.5e-89 331.6 388 53.4
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 2.2e-88 330.1 388 54.6
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 2.9e-88 329.7 390 56.4
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 3.7e-88 329.3 459 49.5
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 4.1e-87 325.9 364 53.6
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 9.2e-87 324.7 342 58.8
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 3.5e-86 322.8 382 52.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.3e-85 320.1 380 56.8
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.1e-82 311.2 464 48.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.3e-82 310.1 466 47.6
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 4.4e-81 305.8 383 51.2
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 6.4e-80 302.0 381 50.9
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 8.3e-80 301.6 388 49.7
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 8.3e-80 301.6 463 47.3
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 5.4e-79 298.9 302 60.9
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 9.2e-79 298.1 445 46.5
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.1e-78 297.0 499 44.7
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 6.0e-78 295.4 468 45.3
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 7.8e-78 295.0 403 49.9
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 2.3e-77 293.5 461 45.8
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.0e-77 293.1 469 45.0
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 8.6e-77 291.6 472 44.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.5e-76 290.8 326 53.4
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 3.3e-76 289.7 462 45.5
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 3.3e-76 289.7 462 45.5
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 7.3e-76 288.5 497 43.3
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 8.1e-75 285.0 500 43.2
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.9e-71 273.9 428 45.8
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 4.1e-71 272.7 490 43.3
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.2e-70 271.2 487 41.9
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.8e-67 260.0 341 50.1
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 4.7e-67 259.2 285 58.6
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 4.0e-66 256.1 360 50.3
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.2e-65 254.6 380 50.3
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 2.6e-65 253.4 281 57.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 9.3e-63 245.0 332 49.7
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 9.3e-63 245.0 338 48.8
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.3e-61 241.1 422 43.6
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.6e-59 234.2 429 42.4
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 9.0e-58 228.4 358 45.8
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.2e-57 228.0 379 42.0
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.3e-56 224.6 394 41.4
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.9e-52 210.7 318 47.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 5.3e-50 202.6 257 49.8
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.2e-48 197.2 321 45.8
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.5e-44 184.5 356 41.0
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.9e-39 167.5 354 40.7
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.1e-38 164.1 144 64.6
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 8.7e-37 158.7 286 45.8
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.3e-35 154.8 351 39.3
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.7e-27 126.7 105 63.8
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.8e-21 107.8 82 72.0
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 5.1e-21 106.3 84 70.2
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 2.0e-20 104.4 243 38.3
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.8e-19 100.5 348 28.2
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.8e-18 97.8 106 55.7
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-17 94.4 67 70.1
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.0e-16 92.0 59 78.0
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 5.0e-16 89.7 354 32.5
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 8.5e-16 89.0 65 66.2
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 8.5e-16 89.0 197 42.6
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.1e-15 88.6 67 65.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.4e-15 88.2 67 64.2
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 5.5e-15 86.3 78 57.7
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 7.9e-14 82.4 95 51.6
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 7.9e-14 82.4 246 31.7
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-13 81.3 56 71.4
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 2.6e-09 67.4 235 32.3
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.6e-06 58.2 107 40.2
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-06 58.2 52 61.5
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.6e-06 58.2 52 61.5
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-06 58.2 52 61.5
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-06 58.2 52 61.5
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-06 58.2 52 61.5
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.6e-06 58.2 52 61.5
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.6e-06 57.0 52 59.6


User provided reference genes

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