Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 9.2e-110 400.2 198 100.0
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 5.2e-89 331.3 198 77.3
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.2e-88 330.1 198 77.3
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.0e-88 329.3 195 76.9
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.6e-88 328.9 197 76.6
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 7.6e-88 327.4 197 76.1
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 9.9e-88 327.0 197 76.1
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.9e-87 325.5 198 78.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 4.9e-87 324.7 197 77.2
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 6.4e-87 324.3 198 76.3
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.4e-86 323.2 198 74.7
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.9e-86 322.8 198 75.8
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 4.2e-86 321.6 198 77.3
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 5.4e-86 321.2 197 74.1
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.2e-85 320.1 197 75.1
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.2e-85 320.1 198 73.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.2e-85 320.1 197 76.1
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.1e-85 319.3 198 74.7
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 3.5e-85 318.5 197 74.6
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 6.0e-85 317.8 198 71.7
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 7.8e-85 317.4 197 76.1
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 7.8e-85 317.4 197 72.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 7.8e-85 317.4 198 75.3
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 7.8e-85 317.4 198 74.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 5.1e-84 314.7 197 75.1
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 5.1e-84 314.7 198 72.7
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 4.3e-83 311.6 198 70.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 7.3e-83 310.8 196 71.4
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 9.6e-83 310.5 198 72.7
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 9.6e-83 310.5 197 74.1
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 71.2
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.8e-82 308.1 198 71.7
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 4.8e-82 308.1 198 70.7
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.2e-82 307.8 198 71.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 6.2e-82 307.8 197 70.6
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 8.1e-82 307.4 198 71.7
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.1e-81 307.0 198 71.2
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.4e-81 306.6 198 69.2
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 1.8e-81 306.2 198 70.7
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.4e-81 305.8 198 71.7
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 2.4e-81 305.8 198 70.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 71.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.0e-81 305.1 198 71.2
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 72.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 5.3e-81 304.7 197 72.6
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 6.9e-81 304.3 196 70.4
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.9e-81 304.3 198 71.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.2e-80 303.5 197 71.6
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 1.5e-80 303.1 197 70.6
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.5e-80 303.1 198 71.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.5e-80 303.1 196 69.4
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.4e-80 302.0 196 69.9
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 70.2
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 7.6e-80 300.8 198 71.7
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.3e-79 300.1 183 76.5
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 3.8e-79 298.5 197 69.5
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.9e-79 298.1 183 74.9
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 69.7
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 8.4e-79 297.4 198 71.2
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.4e-78 296.6 198 70.2
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 70.2
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.9e-78 296.2 193 69.4
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 2.4e-78 295.8 198 69.2
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 69.7
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 4.2e-78 295.0 195 68.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 71.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 69.2
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.2e-77 293.5 197 69.5
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.6e-77 293.1 196 72.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 2.1e-77 292.7 197 69.5
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 69.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 3.5e-77 292.0 189 69.3
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.5e-77 292.0 198 68.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 4.6e-77 291.6 198 68.2
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.3e-76 290.0 198 69.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 1.3e-76 290.0 198 68.2
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.7e-76 289.7 198 68.7
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.7e-76 289.7 198 69.2
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 66.2
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 70.2
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 69.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 8.7e-76 287.3 198 68.2
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 68.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.1e-75 287.0 183 72.7
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 3.3e-75 285.4 186 72.6
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 9.6e-75 283.9 194 74.2
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.6e-75 283.9 184 71.2
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.3e-74 283.5 198 67.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 2.1e-74 282.7 198 67.2
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 2.8e-74 282.3 191 69.1
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.6e-74 282.0 198 65.2
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 3.6e-74 282.0 196 67.3
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 6.2e-74 281.2 194 64.9
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 6.2e-74 281.2 199 68.3
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 6.2e-74 281.2 184 70.7
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 6.2e-74 281.2 184 70.7
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 8.1e-74 280.8 186 72.6
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.4e-73 280.0 198 66.7
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 6.9e-73 277.7 198 66.2
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 6.9e-73 277.7 197 65.5
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.2e-72 276.9 197 65.5
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 65.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 65.7
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.0e-72 276.2 198 67.2
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.6e-72 275.8 187 71.7
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 3.4e-72 275.4 196 65.8
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 7.6e-72 274.2 195 70.3
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.3e-71 273.5 198 64.6
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.9e-71 272.3 197 64.5
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.9e-70 269.6 183 71.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 3.2e-70 268.9 198 67.2
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 2.7e-69 265.8 186 66.7
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 6.0e-69 264.6 197 62.4
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 1.0e-68 263.8 198 64.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.1e-67 260.4 196 64.3
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.6e-67 258.1 178 68.0
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.4e-65 253.4 183 66.1
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 5.8e-64 248.1 196 61.2
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 1.4e-62 243.4 198 58.1
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.8e-60 236.5 143 74.1
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 3.9e-60 235.3 162 68.5
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 8.7e-60 234.2 144 75.7
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 7.4e-59 231.1 155 70.3
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 7.4e-59 231.1 187 59.4
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.8e-58 228.4 169 62.1
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 7.6e-56 221.1 192 54.7
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.7e-55 219.9 144 66.7
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 2.9e-55 219.2 144 67.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 4.2e-54 215.3 197 54.8
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 5.5e-54 214.9 156 64.1
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.1e-49 200.7 180 52.2
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 6.9e-49 198.0 114 78.1
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 2.5e-46 189.5 199 50.3
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.0e-44 184.1 126 69.0
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 3.3e-43 179.1 198 49.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 4.5e-40 168.7 98 74.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 7.2e-38 161.4 181 46.4
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.3e-34 150.6 183 47.0
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 1.0e-31 141.0 181 40.9
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 7.0e-25 118.2 74 67.6
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 9.1e-25 117.9 118 51.7
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.7e-23 113.6 113 52.2
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.0e-23 112.1 68 73.5
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 8.5e-23 111.3 179 36.3
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.5e-22 110.5 118 51.7
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 4.7e-21 105.5 120 46.7
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 4.4e-19 99.0 194 36.1
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.4e-19 99.0 64 65.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 1.6e-16 90.5 71 53.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.1e-14 84.3 58 69.0
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 3.7e-10 69.3 43 74.4
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 1.1e-06 57.8 35 71.4


User provided reference genes

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