Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 3.8e-84 314.7 149 100.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.0e-25 118.6 62 91.9
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 4.6e-21 105.1 62 80.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 4.0e-17 92.0 62 71.0
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 6.9e-17 91.3 60 71.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 6.9e-17 91.3 58 74.1
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 9.0e-17 90.9 62 72.6
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.2e-16 90.5 60 71.7
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.5e-16 90.1 62 71.0
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.5e-16 90.1 60 70.0
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.0e-16 89.7 62 66.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.0e-16 89.7 60 70.0
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.6e-16 89.4 62 69.4
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 2.6e-16 89.4 62 66.1
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.4e-16 89.0 62 64.5
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.4e-16 89.0 62 64.5
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 4.5e-16 88.6 58 72.4
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 4.5e-16 88.6 62 69.4
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 4.5e-16 88.6 62 64.5
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 5.8e-16 88.2 60 70.0
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 5.8e-16 88.2 60 71.7
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.8e-16 88.2 60 70.0
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 7.6e-16 87.8 62 64.5
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 7.6e-16 87.8 50 90.0
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.6e-16 87.8 62 66.1
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 7.6e-16 87.8 56 75.0
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 9.9e-16 87.4 52 80.8
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 9.9e-16 87.4 58 70.7
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 9.9e-16 87.4 61 68.9
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.3e-15 87.0 61 68.9
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.3e-15 87.0 60 73.3
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.3e-15 87.0 60 68.3
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.7e-15 86.7 62 67.7
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.7e-15 86.7 60 70.0
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.2e-15 86.3 58 70.7
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.2e-15 86.3 60 66.7
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.2e-15 86.3 60 71.7
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 2.9e-15 85.9 58 70.7
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.9e-15 85.9 62 67.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.9e-15 85.9 58 70.7
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 3.8e-15 85.5 58 70.7
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 3.8e-15 85.5 60 66.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.8e-15 85.5 62 66.1
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 4.9e-15 85.1 61 67.2
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.9e-15 85.1 60 65.0
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 4.9e-15 85.1 60 68.3
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 6.4e-15 84.7 60 68.3
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.4e-15 84.7 62 66.1
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.4e-15 84.7 62 66.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.4e-15 84.7 62 66.1
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.4e-15 84.7 62 66.1
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 8.4e-15 84.3 58 65.5
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.4e-15 84.3 62 64.5
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.4e-15 84.3 56 71.4
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-14 84.0 62 64.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.1e-14 84.0 60 66.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.1e-14 84.0 60 68.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-14 84.0 61 67.2
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-14 84.0 61 67.2
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-14 84.0 61 67.2
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-14 84.0 61 67.2
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.1e-14 84.0 60 71.7
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.4e-14 83.6 61 65.6
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.4e-14 83.6 54 74.1
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-14 83.6 62 64.5
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-14 83.2 62 64.5
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-14 82.8 62 64.5
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 2.4e-14 82.8 60 70.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.4e-14 82.8 61 68.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.4e-14 82.8 63 63.5
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 2.4e-14 82.8 63 63.5
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.4e-14 82.8 63 63.5
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 3.2e-14 82.4 58 67.2
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-14 82.4 62 64.5
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.2e-14 82.4 63 68.3
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 3.2e-14 82.4 63 63.5
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 3.2e-14 82.4 61 68.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 3.2e-14 82.4 61 68.9
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.2e-14 82.4 59 69.5
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 5.4e-14 81.6 54 74.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.4e-14 81.6 60 60.0
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 5.4e-14 81.6 62 66.1
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 5.4e-14 81.6 54 70.4
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.1e-14 81.3 60 60.0
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 7.1e-14 81.3 43 88.4
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.1e-14 81.3 51 76.5
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.1e-14 81.3 62 62.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 7.1e-14 81.3 62 69.4
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.1e-14 81.3 61 65.6
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.1e-14 81.3 61 65.6
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 9.3e-14 80.9 58 63.8
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 9.3e-14 80.9 54 72.2
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 9.3e-14 80.9 51 76.5
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.3e-14 80.9 62 59.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 1.2e-13 80.5 63 66.7
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.6e-13 80.1 61 57.4
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.6e-13 80.1 61 68.9
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.6e-13 80.1 60 61.7
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.7e-13 79.3 56 67.9
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.7e-13 79.3 58 62.1
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-13 79.3 42 88.1
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 2.7e-13 79.3 60 65.0
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 3.5e-13 79.0 54 72.2
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 3.5e-13 79.0 60 63.3
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.6e-13 78.6 59 64.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 4.6e-13 78.6 70 62.9
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 6.0e-13 78.2 55 67.3
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 6.0e-13 78.2 60 58.3
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 7.9e-13 77.8 43 83.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.9e-13 77.8 53 67.9
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 7.9e-13 77.8 60 66.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 7.9e-13 77.8 54 70.4
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.3e-12 77.0 58 63.8
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.3e-12 77.0 58 63.8
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.3e-12 76.3 56 67.9
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.0e-12 75.9 59 66.1
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.0e-12 75.9 59 66.1
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 3.0e-12 75.9 62 61.3
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 5.1e-12 75.1 59 64.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 6.7e-12 74.7 68 61.8
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.5e-11 72.8 59 61.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.3e-11 72.4 57 66.7
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.3e-11 72.4 57 66.7
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 3.3e-11 72.4 59 62.7
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 5.6e-11 71.6 54 68.5
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 7.4e-11 71.2 60 58.3
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 7.4e-11 71.2 53 66.0
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 9.6e-11 70.9 42 81.0
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 2.8e-10 69.3 48 70.8
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 3.7e-10 68.9 61 59.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.8e-09 66.6 59 57.6
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.5e-08 63.5 55 56.4
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 7.6e-08 61.2 56 58.9
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.9e-08 60.8 43 65.1
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-07 60.1 43 65.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-07 59.3 45 62.2
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.4e-06 56.2 43 60.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.4e-06 56.2 40 65.0


User provided reference genes

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