Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1746.5 865 100.0
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1358.2 869 77.9
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1354.3 871 77.6
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1326.6 870 77.0
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1321.6 872 75.9
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1313.1 866 75.8
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1312.7 866 75.5
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1299.6 869 74.9
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1294.3 873 74.2
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1282.7 866 74.5
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1276.9 911 71.7
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1273.1 868 73.2
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1273.1 876 72.8
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1273.1 905 71.4
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1271.5 866 73.9
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1266.9 905 71.0
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1265.8 856 74.5
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1257.7 868 72.9
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1255.4 867 72.2
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 896 71.0
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1250.0 874 72.5
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1249.6 864 72.9
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1247.3 890 71.5
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1245.0 840 74.5
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1243.8 904 69.9
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1243.4 867 72.9
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1240.3 866 72.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1238.4 866 72.2
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1238.4 866 72.4
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1237.6 858 72.7
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1229.5 855 72.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1228.4 890 70.6
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1228.4 907 69.3
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1224.2 831 73.5
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1223.8 865 71.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1221.1 891 69.6
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1219.9 868 71.2
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1214.9 879 71.1
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1214.1 873 70.9
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1209.9 864 70.8
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1205.3 870 70.0
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1204.9 858 71.7
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1198.3 880 71.0
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1198.0 866 70.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 874 70.6
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 864 69.7
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1186.8 882 68.8
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1186.8 893 68.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1186.4 861 70.7
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1184.5 864 69.4
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1184.1 867 69.9
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1183.7 872 69.5
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1183.3 867 69.6
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1182.2 860 69.3
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1182.2 864 69.2
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1180.2 888 68.1
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1179.9 884 68.9
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1179.5 866 69.3
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1177.9 852 69.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1177.5 865 69.1
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1174.8 864 68.5
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1173.7 871 68.5
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1172.5 858 69.6
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1172.5 854 69.4
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 882 68.5
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1167.5 880 68.0
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1166.8 863 69.6
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1166.8 853 69.4
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1164.1 896 66.9
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1163.3 862 69.0
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1162.9 900 67.2
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1160.6 867 68.5
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1159.4 862 68.2
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1159.1 890 66.5
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1156.7 891 66.2
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1152.9 891 66.2
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1150.6 891 66.4
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1149.8 870 68.2
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 854 68.3
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1147.9 914 65.8
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1143.3 872 68.0
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 867 68.9
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 863 68.4
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 855 67.3
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 914 64.6
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 799 70.3
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 915 64.4
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1127.1 861 67.2
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1125.5 861 67.1
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1119.4 873 65.4
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1116.7 872 65.6
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1115.1 867 67.1
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1115.1 883 66.0
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 890 66.0
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1111.3 881 64.8
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1111.3 871 65.2
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1110.9 959 61.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1099.3 867 64.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1095.5 864 64.9
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1095.1 835 68.7
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 0.0e+00 1089.3 880 65.6
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1088.2 747 72.4
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1087.0 890 63.1
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1085.1 872 63.6
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1082.0 866 64.8
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 886 64.3
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 3.4e-310 1068.1 871 64.6
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 7.6e-310 1067.0 876 64.3
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 1.4e-308 1062.8 879 63.7
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.9e-308 1062.4 885 63.1
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 5.5e-308 1060.8 894 62.9
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 5.5e-308 1060.8 878 63.7
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 6.0e-307 1057.4 884 63.3
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 6.7e-306 1053.9 884 63.2
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 6.3e-304 1047.3 888 63.1
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 8.2e-304 1047.0 953 58.6
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 8.2e-304 1047.0 876 63.5
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.0e-302 1042.3 832 66.8
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 6.5e-301 1037.3 859 62.6
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 5.5e-300 1034.2 831 65.2
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.0e-298 1030.0 812 65.5
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.3e-298 1028.9 816 64.8
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.8e-296 1021.9 852 63.0
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 4.1e-287 991.5 868 61.2
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 9.1e-287 990.3 603 80.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.9e-285 985.3 874 60.5
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.7e-280 969.5 873 60.5
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.2e-277 959.1 906 57.0
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.9e-276 956.1 904 56.7
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.5e-276 955.7 590 78.8
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.0e-265 919.5 829 58.4
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 4.5e-262 908.3 841 56.7
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.3e-260 902.1 828 58.1
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 5.4e-255 884.8 897 53.0
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.7e-253 879.8 861 55.2
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.3e-250 869.4 903 54.7
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 4.9e-248 861.7 831 54.4
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.2e-246 857.1 888 52.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 4.4e-241 838.6 815 54.8
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 5.6e-236 821.6 622 65.8
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 5.2e-234 815.1 804 54.4
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 3.6e-211 739.2 857 46.3
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.1e-210 737.6 573 67.5
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 5.8e-209 731.9 574 62.0
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.1e-206 723.4 866 45.6
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 6.9e-202 708.4 851 44.5
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 1.6e-190 670.6 875 44.9
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.5e-188 664.1 624 57.7
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 2.9e-184 649.8 626 56.5
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.1e-183 647.9 627 50.9
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.4e-175 620.9 581 57.8
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.5e-145 520.0 498 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.0e-140 504.2 570 46.5
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.6e-129 468.0 427 57.6
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 8.4e-115 419.1 575 39.8
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.4e-114 418.3 475 50.3
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 4.3e-111 406.8 499 45.7
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-101 374.8 401 53.4
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.1e-95 355.5 264 64.4
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 5.3e-93 346.7 698 32.2
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.8e-85 321.6 225 69.8
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 2.1e-78 298.1 264 57.2
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 4.3e-71 273.9 175 72.0
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 3.0e-64 251.1 522 29.9
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.5e-58 231.5 156 72.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 2.1e-57 228.4 498 30.1
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 3.5e-36 157.9 182 52.7
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 5.2e-24 117.5 208 36.1
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 9.8e-23 113.2 175 39.4
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.7e-20 105.1 73 65.8
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 4.6e-20 104.4 74 73.0
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 2.3e-19 102.1 67 73.1
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.8e-16 92.4 119 48.7
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 4.6e-12 77.8 74 56.8


User provided reference genes

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