Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 1.5e-159 566.2 314 100.0
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 5.1e-30 136.0 304 35.2
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 9.7e-29 131.7 302 36.8
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.4e-27 127.9 255 38.8
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 4.1e-27 126.3 328 34.8
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 6.9e-27 125.6 301 34.6
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 9.0e-27 125.2 320 34.4
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 2.2e-25 120.6 192 42.7
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 9.4e-24 115.2 310 33.2
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 2.3e-22 110.5 307 31.9
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 1.1e-21 108.2 315 32.7
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 7.4e-21 105.5 306 33.0
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 7.4e-21 105.5 306 31.4
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 9.7e-21 105.1 319 32.3
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 1.7e-20 104.4 320 31.6
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 1.7e-20 104.4 310 31.9
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 2.8e-20 103.6 321 33.0
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 3.7e-20 103.2 306 29.4
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 4.8e-20 102.8 307 30.3
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 1.4e-19 101.3 316 32.9
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 2.4e-19 100.5 318 31.1
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 3.1e-19 100.1 357 31.1
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 4.1e-19 99.8 324 29.9
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 5.3e-19 99.4 128 47.7
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-18 98.2 311 31.5
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 2.0e-18 97.4 305 31.1
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.0e-18 97.4 144 43.1
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 4.5e-18 96.3 147 42.2
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 7.7e-18 95.5 259 33.6
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 3.8e-17 93.2 144 41.7
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 5.0e-17 92.8 315 28.6
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 5.0e-17 92.8 272 35.7
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 6.5e-17 92.4 318 29.9
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 8.5e-17 92.0 178 37.1
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 2.5e-16 90.5 85 52.9
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 5.5e-16 89.4 150 41.3
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 7.2e-16 89.0 98 50.0
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 7.2e-16 89.0 138 40.6
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 9.4e-16 88.6 142 40.8
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 9.4e-16 88.6 304 30.6
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 9.4e-16 88.6 150 40.7
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 1.2e-15 88.2 190 33.7
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.2e-15 88.2 312 28.2
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 1.2e-15 88.2 333 30.0
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.6e-15 87.8 301 29.9
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 1.6e-15 87.8 83 55.4
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 2.7e-15 87.0 145 39.3
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.7e-15 87.0 314 31.5
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.6e-15 86.7 84 53.6
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 4.7e-15 86.3 94 47.9
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 4.7e-15 86.3 159 34.6
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 6.1e-15 85.9 119 42.9
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 6.1e-15 85.9 119 42.9
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 7.9e-15 85.5 249 30.9
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 7.9e-15 85.5 92 50.0
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 1.0e-14 85.1 84 47.6
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 1.0e-14 85.1 87 51.7
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 1.4e-14 84.7 99 48.5
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 1.4e-14 84.7 93 47.3
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.8e-14 84.3 241 35.7
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 2.3e-14 84.0 160 37.5
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 3.0e-14 83.6 250 31.6
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.0e-14 83.6 88 51.1
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 3.9e-14 83.2 89 49.4
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 5.2e-14 82.8 306 27.5
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 6.7e-14 82.4 93 45.2
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 6.7e-14 82.4 93 45.2
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 8.8e-14 82.0 90 47.8
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.1e-13 81.6 133 38.3
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 1.1e-13 81.6 84 50.0
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 1.1e-13 81.6 84 50.0
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 1.5e-13 81.3 192 34.4
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 2.0e-13 80.9 90 48.9
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 2.0e-13 80.9 86 46.5
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 2.6e-13 80.5 213 32.9
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 2.6e-13 80.5 89 43.8
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 2.6e-13 80.5 88 48.9
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 4.4e-13 79.7 200 31.0
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 9.7e-13 78.6 98 40.8
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 9.7e-13 78.6 98 40.8
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 9.7e-13 78.6 86 45.3
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 1.3e-12 78.2 98 40.8
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 1.3e-12 78.2 148 41.9
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 1.3e-12 78.2 87 44.8
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 1.3e-12 78.2 333 28.8
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 2.2e-12 77.4 85 45.9
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 2.2e-12 77.4 180 33.3
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 2.8e-12 77.0 163 35.6
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 2.8e-12 77.0 116 39.7
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 6.3e-12 75.9 79 51.9
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 1.8e-11 74.3 91 45.1
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 1.8e-11 74.3 90 42.2
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 3.1e-11 73.6 85 43.5
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 5.3e-11 72.8 78 44.9
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 5.3e-11 72.8 75 52.0
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 7.0e-11 72.4 102 39.2
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-10 71.6 180 28.3
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-10 71.6 180 28.3
GSVIVG01012054001 Vitis vinifera HOM05D001185 ORTHO05D002551 1.6e-10 71.2 168 36.3
Oeu013185.1 Olea europaea HOM05D006433 ORTHO05D005382 3.5e-10 70.1 93 41.9
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 3.5e-10 70.1 98 38.8
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 5.9e-10 69.3 158 29.1
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.3e-09 68.2 151 29.8
Duzib213G0120 Durio zibethinus HOM05D013385 ORTHO05D005382 1.7e-09 67.8 90 43.3
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 2.9e-09 67.0 90 43.3
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 2.9e-09 67.0 147 34.7
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 3.8e-09 66.6 100 44.0
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 3.8e-09 66.6 81 44.4
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 8.5e-09 65.5 86 44.2
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.1e-08 65.1 203 28.6
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.5e-08 64.7 144 34.7
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.5e-08 64.7 144 34.7
DCAR_023460 Daucus carota HOM05D006433 ORTHO05D005382 4.2e-08 63.2 62 58.1
Migut.H01894 Erythranthe guttata HOM05D012187 ORTHO05D005382 4.2e-08 63.2 75 48.0
Thecc.07G068900 Theobroma cacao HOM05D013385 ORTHO05D005382 4.2e-08 63.2 91 40.7
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 4.2e-08 63.2 128 35.9
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 7.2e-08 62.4 191 28.8
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 2.1e-07 60.8 65 47.7
Potri.013G149300 Populus trichocarpa HOM05D008701 ORTHO05D010238 2.1e-07 60.8 79 44.3
MELO3C023593.2 Cucumis melo HOM05D027220 ORTHO05D005382 2.7e-07 60.5 214 28.5
MBI02_g25137_MAGBIO Magnolia biondii HOM05D008701 ORTHO05D010238 2.7e-07 60.5 220 27.3
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 2.7e-07 60.5 181 27.1
Gohir.D01G056900 Gossypium hirsutum HOM05D013385 ORTHO05D005382 3.6e-07 60.1 129 38.0
Ciclev10018089m.g Citrus clementina HOM05D008701 ORTHO05D010238 4.7e-07 59.7 134 31.3
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 1.0e-06 58.5 55 49.1
Gohir.A01G069700 Gossypium hirsutum HOM05D013385 ORTHO05D005382 1.0e-06 58.5 111 39.6
Gorai.002G077300 Gossypium raimondii HOM05D013385 ORTHO05D005382 1.0e-06 58.5 102 41.2
Manes.15G081600 Manihot esculenta HOM05D006433 ORTHO05D005382 1.0e-06 58.5 192 29.7
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 1.4e-06 58.2 89 37.1
PSO782G4784 Papaver somniferum HOM05D061112 ORTHO05D005382 1.8e-06 57.8 92 38.0
SEGI_22038 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 1.8e-06 57.8 110 30.9
HPP92_022556 Vanilla planifolia HOM05D006433 ORTHO05D005382 1.8e-06 57.8 82 34.1
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 2.3e-06 57.4 79 34.2
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 2.3e-06 57.4 55 47.3
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 2.3e-06 57.4 55 47.3
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 2.3e-06 57.4 55 47.3
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 2.3e-06 57.4 55 47.3
Duzib268G1412 Durio zibethinus HOM05D013385 ORTHO05D005382 4.0e-06 56.6 75 40.0
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 5.2e-06 56.2 74 37.8
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 6.7e-06 55.8 70 44.3
Lalb_Chr01g0006371 Lupinus albus HOM05D019215 ORTHO05D014071 8.8e-06 55.5 100 34.0
PGR083G0466 Punica granatum HOM05D012187 ORTHO05D005382 8.8e-06 55.5 76 42.1


User provided reference genes

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