Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g02180 Coffea canephora HOM05D005559 ORTHO05D006957 5.6e-35 150.6 88 100.0
Cc10_g00280 Coffea canephora HOM05D005559 ORTHO05D006957 5.1e-20 100.9 54 88.9
Nitab4.5_0001756g0040 Nicotiana tabacum HOM05D005559 ORTHO05D006957 6.1e-13 77.4 54 68.5
Solyc04g082750.3 Solanum lycopersicum HOM05D005559 ORTHO05D006957 6.1e-13 77.4 54 64.8
Sopen04g036390 Solanum pennellii HOM05D005559 ORTHO05D006957 6.1e-13 77.4 54 64.8
MSTRG.24514 Avicennia marina HOM05D005559 ORTHO05D006957 7.9e-13 77.0 54 68.5
Manes.18G002100 Manihot esculenta HOM05D005559 ORTHO05D006957 1.0e-12 76.6 54 66.7
Sabra02G0003500 Salix brachista HOM05D005559 ORTHO05D006957 1.8e-12 75.9 54 66.7
CAN.G1330.11 Capsicum annuum HOM05D005559 ORTHO05D006957 2.3e-12 75.5 54 63.0
Potri.002G005100 Populus trichocarpa HOM05D005559 ORTHO05D006957 2.3e-12 75.5 54 66.7
PGSC0003DMG400009923 Solanum tuberosum HOM05D005559 ORTHO05D006957 2.3e-12 75.5 54 64.8
SalBow6G6240 Salvia bowleyana HOM05D005559 ORTHO05D006957 3.9e-12 74.7 54 64.8
Duzib116G0447 Durio zibethinus HOM05D005559 ORTHO05D006957 5.1e-12 74.3 54 63.0
Peaxi162Scf00680g00636 Petunia axillaris HOM05D005559 ORTHO05D006957 5.1e-12 74.3 54 64.8
Phvul.001G000700 Phaseolus vulgaris HOM05D005559 ORTHO05D006957 5.1e-12 74.3 54 64.8
Glyma.14G223900 Glycine max HOM05D005559 ORTHO05D006957 6.7e-12 73.9 51 66.7
Lsat_1_v5_gn_2_3240 Lactuca sativa HOM05D005559 ORTHO05D006957 6.7e-12 73.9 54 66.7
Lalb_Chr01g0008311 Lupinus albus HOM05D005559 ORTHO05D006957 6.7e-12 73.9 54 64.8
vmacro21769 Vaccinium macrocarpon HOM05D005559 ORTHO05D006957 6.7e-12 73.9 44 77.3
Actinidia17075 Actinidia chinensis HOM05D005559 ORTHO05D006957 8.8e-12 73.6 54 68.5
Cfa014135 Carpinus fangiana HOM05D005559 ORTHO05D006957 8.8e-12 73.6 54 64.8
Glyma.17G262100 Glycine max HOM05D005559 ORTHO05D006957 8.8e-12 73.6 51 64.7
MD06G1004300 Malus domestica HOM05D005559 ORTHO05D006957 8.8e-12 73.6 54 64.8
Medtr1g026540 Medicago truncatula HOM05D005559 ORTHO05D006957 8.8e-12 73.6 56 64.3
Oeu035757.2 Olea europaea HOM05D005559 ORTHO05D006957 8.8e-12 73.6 54 64.8
SGA_v2.0_scaffold227G43160 Striga asiatica HOM05D005559 ORTHO05D006957 8.8e-12 73.6 54 64.8
DCAR_023024 Daucus carota HOM05D005559 ORTHO05D006957 1.1e-11 73.2 54 66.7
arahy.Tifrunner.gnm1.ann1.MFDH98 Arachis hypogaea HOM05D005559 ORTHO05D006957 1.5e-11 72.8 55 61.8
CANSAT25G2267 Cannabis sativa HOM05D005559 ORTHO05D006957 1.5e-11 72.8 54 61.1
COL.COLO4_12311 Corchorus olitorius HOM05D005559 ORTHO05D006957 1.5e-11 72.8 54 63.0
Gohir.D01G087100 Gossypium hirsutum HOM05D005559 ORTHO05D006957 1.5e-11 72.8 54 63.0
Gorai.002G112800 Gossypium raimondii HOM05D005559 ORTHO05D006957 1.5e-11 72.8 54 63.0
unitig_22.g5730 Utricularia gibba HOM05D005559 ORTHO05D006957 1.5e-11 72.8 54 64.8
QL02p015726 Quercus lobata HOM05D005559 ORTHO05D006957 2.0e-11 72.4 54 64.8
Sed0000545 Sechium edule HOM05D005559 ORTHO05D006957 2.5e-11 72.0 56 62.5
AL4G29300 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 3.3e-11 71.6 54 63.0
Thhalv10016587m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 3.3e-11 71.6 54 61.1
FAN08G1655 Fragaria x ananassa HOM05D005559 ORTHO05D006957 3.3e-11 71.6 62 61.3
Sp4g15980 Schrenkiella parvula HOM05D005559 ORTHO05D006957 3.3e-11 71.6 54 61.1
TPR.G26383 Trifolium pratense HOM05D005559 ORTHO05D006957 3.3e-11 71.6 44 75.0
Haze_22861 Corylus avellana HOM05D005559 ORTHO05D006957 4.3e-11 71.2 54 63.0
Migut.N02985 Erythranthe guttata HOM05D005559 ORTHO05D006957 4.3e-11 71.2 54 63.0
GSVIVG01013425001 Vitis vinifera HOM05D005559 ORTHO05D006957 4.3e-11 71.2 55 63.6
AT2G33630 Arabidopsis thaliana HOM05D005559 ORTHO05D006957 5.7e-11 70.9 54 61.1
Carub.0004s1526 Capsella rubella HOM05D005559 ORTHO05D006957 5.7e-11 70.9 54 61.1
Ciclev10001002m.g Citrus clementina HOM05D005559 ORTHO05D006957 5.7e-11 70.9 54 63.0
Os02g0715200 Oryza sativa ssp. japonica HOM05D005559 ORTHO05D006957 5.7e-11 70.9 54 61.1
Psat0s1355g0040 Pisum sativum HOM05D005559 ORTHO05D006957 5.7e-11 70.9 44 72.7
Thecc.08G100000 Theobroma cacao HOM05D005559 ORTHO05D006957 5.7e-11 70.9 54 63.0
BcaB01g03926 Brassica carinata HOM05D005559 ORTHO05D006957 7.4e-11 70.5 54 61.1
ECA238G3676 Erigeron canadensis HOM05D005559 ORTHO05D006957 7.4e-11 70.5 54 63.0
Gohir.A01G102000 Gossypium hirsutum HOM05D005559 ORTHO05D006957 9.7e-11 70.1 54 61.1
Prupe.5G005700 Prunus persica HOM05D005559 ORTHO05D006957 9.7e-11 70.1 54 63.0
RcHm_v2.0_Chr7g0216661 Rosa chinensis HOM05D005559 ORTHO05D006957 9.7e-11 70.1 54 61.1
THA.LOC104806872 Tarenaya hassleriana HOM05D005559 ORTHO05D006957 9.7e-11 70.1 54 61.1
EL10Ac1g01873 Beta vulgaris HOM05D005559 ORTHO05D006957 1.3e-10 69.7 54 59.3
A03p18820 Brassica napus HOM05D005559 ORTHO05D006957 1.3e-10 69.7 54 59.3
C03p21990 Brassica napus HOM05D005559 ORTHO05D006957 1.3e-10 69.7 54 59.3
BolC3t14582H Brassica oleracea HOM05D005559 ORTHO05D006957 1.3e-10 69.7 54 59.3
BraA03t11142Z Brassica rapa HOM05D005559 ORTHO05D006957 1.3e-10 69.7 54 59.3
Lj5g0020249 Lotus japonicus HOM05D005559 ORTHO05D006957 1.3e-10 69.7 44 75.0
Ah.01g024690 Amaranthus hybridus HOM05D005559 ORTHO05D006957 1.7e-10 69.3 54 61.1
CiPaw.07G133700 Carya illinoinensis HOM05D005559 ORTHO05D006957 1.7e-10 69.3 54 63.0
FvH4_5g26130 Fragaria vesca HOM05D005559 ORTHO05D006957 1.7e-10 69.3 44 72.7
FAN18G3125 Fragaria x ananassa HOM05D005559 ORTHO05D006957 1.7e-10 69.3 44 72.7
CARHR127640 Cardamine hirsuta HOM05D005559 ORTHO05D006957 2.2e-10 68.9 54 57.4
FAN13G1149 Fragaria x ananassa HOM05D005559 ORTHO05D006957 2.2e-10 68.9 43 74.4
Lj4A5T46 Lonicera japonica HOM05D005559 ORTHO05D006957 2.2e-10 68.9 54 59.3
Aa31LG9G13560 Aethionema arabicum HOM05D005559 ORTHO05D006957 2.8e-10 68.6 54 59.3
VMungo0647G1813 Vigna mungo HOM05D005559 ORTHO05D006957 2.8e-10 68.6 51 64.7
ClCG11G019030 Citrullus lanatus HOM05D005559 ORTHO05D006957 3.7e-10 68.2 54 61.1
Dinv13752 Davidia involucrata HOM05D005559 ORTHO05D006957 3.7e-10 68.2 44 72.7
CSS0038076 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 4.8e-10 67.8 44 70.5
CsaV3_4G037630 Cucumis sativus L. HOM05D005559 ORTHO05D006957 4.8e-10 67.8 54 59.3
HanXRQChr06g0185311 Helianthus annuus HOM05D005559 ORTHO05D006957 4.8e-10 67.8 53 64.2
TWI56G0785 Tripterygium wilfordii HOM05D005559 ORTHO05D006957 4.8e-10 67.8 43 72.1
MELO3C017057.2 Cucumis melo HOM05D005559 ORTHO05D006957 6.3e-10 67.4 54 57.4
HPP92_020534 Vanilla planifolia HOM05D005559 ORTHO05D006957 6.3e-10 67.4 43 72.1
MBI01_g28397_MAGBIO Magnolia biondii HOM05D005559 ORTHO05D006957 8.2e-10 67.0 62 58.1
SEGI_39851 Sequoiadendron giganteum HOM05D005559 ORTHO05D006957 8.2e-10 67.0 44 70.5
CDE05G2847 Ceratophyllum demersum HOM05D005559 ORTHO05D006957 1.1e-09 66.6 44 70.5
Nn5g31046 Nelumbo nucifera HOM05D005559 ORTHO05D006957 1.1e-09 66.6 55 56.4
BcaC01g05830 Brassica carinata HOM05D005559 ORTHO05D006957 1.4e-09 66.2 54 55.6
Eucgr.F01812 Eucalyptus grandis HOM05D005559 ORTHO05D006957 1.8e-09 65.9 51 58.8
Atru.chr13.62 Acer truncatum HOM05D005559 ORTHO05D006957 2.4e-09 65.5 44 68.2
Cpa.g.sc26.16 Carica papaya HOM05D005559 ORTHO05D006957 2.4e-09 65.5 43 69.8
TAR381G1403 Trochodendron aralioides HOM05D005559 ORTHO05D006957 2.4e-09 65.5 54 57.4
Hund01836 Selenicereus undatus HOM05D005559 ORTHO05D006957 6.9e-09 63.9 54 55.6
Ah.03g148440 Amaranthus hybridus HOM05D005559 ORTHO05D006957 9.1e-09 63.5 54 55.6
PSO541G1621 Papaver somniferum HOM05D005559 ORTHO05D006957 9.1e-09 63.5 55 54.5
PSO675G8223 Papaver somniferum HOM05D005559 ORTHO05D006957 9.1e-09 63.5 55 54.5
AUR62024097 Chenopodium quinoa HOM05D005559 ORTHO05D006957 1.2e-08 63.2 60 51.7
Zm00001eb252680 Zea mays HOM05D005559 ORTHO05D006957 1.2e-08 63.2 54 55.6
PGR031G1403 Punica granatum HOM05D005559 ORTHO05D006957 1.5e-08 62.8 44 65.9
Sabra02G0003600 Salix brachista HOM05D005559 ORTHO05D006957 5.9e-08 60.8 44 63.6
ATR0605G082 Amborella trichopoda HOM05D005559 ORTHO05D006957 7.7e-08 60.5 54 57.4
SMO147G0007 Selaginella moellendorffii HOM05D005559 ORTHO05D006957 7.7e-08 60.5 46 56.5
Sc26g0004750 Simmondsia chinensis HOM05D005559 ORTHO05D006957 1.3e-07 59.7 54 51.9
Aqoxy6G02983 Aquilegia oxysepala HOM05D005559 ORTHO05D006957 1.7e-07 59.3 56 53.6
C06p50680 Brassica napus HOM05D005559 ORTHO05D006957 6.5e-07 57.4 54 51.9
Thhalv10018454m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 1.1e-06 56.6 50 52.0
Ah.11g041970 Amaranthus hybridus HOM05D005559 ORTHO05D006957 1.4e-06 56.2 44 59.1
Carub.0002s2336 Capsella rubella HOM05D005559 ORTHO05D006957 1.9e-06 55.8 50 52.0
Ca_13494_v3 Cicer arietinum L. HOM05D005559 ORTHO05D006957 2.5e-06 55.5 34 76.5
Ca_30151_v3 Cicer arietinum L. HOM05D005559 ORTHO05D006957 2.5e-06 55.5 34 76.5
Sp5g31610 Schrenkiella parvula HOM05D005559 ORTHO05D006957 2.5e-06 55.5 50 52.0
BcaC08g47244 Brassica carinata HOM05D005559 ORTHO05D006957 3.2e-06 55.1 54 50.0
A07p42110 Brassica napus HOM05D005559 ORTHO05D006957 3.2e-06 55.1 54 50.0
BolC6t40094H Brassica oleracea HOM05D005559 ORTHO05D006957 3.2e-06 55.1 54 50.0


User provided reference genes

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