Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 7.5e-80 300.4 150 100.0
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 2.8e-66 255.4 150 88.0
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.9e-55 218.0 150 74.7
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.9e-55 218.0 150 74.7
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.2e-53 213.4 150 72.7
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 1.2e-53 213.4 150 70.7
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 3.5e-53 211.8 149 71.1
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 4.6e-53 211.5 150 72.7
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.0e-52 210.3 150 71.3
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.7e-52 209.5 151 72.2
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 2.3e-52 209.1 150 70.7
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.3e-52 209.1 150 69.3
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.3e-52 209.1 150 72.0
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 3.0e-52 208.8 150 69.3
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.9e-52 208.4 150 70.7
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 5.1e-52 208.0 150 70.0
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 5.1e-52 208.0 149 69.8
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 5.1e-52 208.0 149 69.8
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 5.1e-52 208.0 150 71.3
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 6.6e-52 207.6 150 70.7
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 6.6e-52 207.6 150 70.7
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.6e-52 207.2 150 68.7
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 8.6e-52 207.2 150 70.7
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.1e-51 206.8 150 71.3
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.1e-51 206.8 150 69.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.1e-51 206.8 150 69.3
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.9e-51 206.1 150 68.7
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.9e-51 206.1 150 70.0
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.9e-51 206.1 150 69.3
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.5e-51 205.7 152 70.4
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 2.5e-51 205.7 150 70.7
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.3e-51 205.3 150 68.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.3e-51 204.9 150 68.0
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 4.3e-51 204.9 150 69.3
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.6e-51 204.5 148 70.3
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 7.3e-51 204.1 150 68.7
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 7.3e-51 204.1 144 70.8
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 7.3e-51 204.1 150 69.3
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 9.6e-51 203.8 150 69.3
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.2e-50 203.4 150 70.0
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.2e-50 203.4 150 70.0
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.2e-50 203.4 152 71.1
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.6e-50 203.0 141 73.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-50 203.0 150 69.3
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-50 203.0 144 71.5
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.1e-50 202.6 150 69.3
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.8e-50 202.2 150 68.0
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 4.7e-50 201.4 150 70.0
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.7e-50 201.4 150 68.7
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 6.2e-50 201.1 149 67.8
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 6.2e-50 201.1 144 70.8
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 8.1e-50 200.7 150 68.7
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 8.1e-50 200.7 150 66.7
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.1e-49 200.3 144 70.1
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.4e-49 199.9 144 70.1
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.8e-49 199.5 149 68.5
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 2.4e-49 199.1 149 67.8
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 2.4e-49 199.1 150 68.0
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.4e-49 199.1 144 70.1
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.1e-49 198.7 147 68.7
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 4.0e-49 198.4 147 67.3
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 4.0e-49 198.4 150 68.0
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 4.0e-49 198.4 146 67.8
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 5.2e-49 198.0 147 68.0
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.9e-49 197.6 146 67.8
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 9.0e-49 197.2 144 68.8
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-48 196.8 144 68.8
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.2e-48 196.8 141 70.2
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.2e-48 196.8 150 67.3
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.5e-48 196.4 146 66.4
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.5e-48 196.4 141 69.5
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.5e-48 196.4 141 69.5
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.0e-48 196.1 141 70.2
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 2.0e-48 196.1 149 65.1
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 2.0e-48 196.1 150 68.0
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.6e-48 195.7 150 66.0
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 3.4e-48 195.3 147 66.0
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 4.4e-48 194.9 147 66.7
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 4.4e-48 194.9 144 68.1
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 4.4e-48 194.9 144 67.4
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 5.8e-48 194.5 144 67.4
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 5.8e-48 194.5 144 68.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 7.6e-48 194.1 150 65.3
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 7.6e-48 194.1 150 66.0
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 9.9e-48 193.7 147 66.7
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 9.9e-48 193.7 147 66.7
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-47 193.4 145 66.2
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 1.3e-47 193.4 144 66.7
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 1.3e-47 193.4 144 66.7
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.3e-47 193.4 150 66.7
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.3e-47 193.4 150 66.7
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.3e-47 193.4 145 66.2
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.7e-47 193.0 149 66.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.2e-47 192.6 148 66.9
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 4.9e-47 191.4 146 66.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 6.4e-47 191.0 144 67.4
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.9e-46 189.5 150 64.7
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.9e-46 189.5 172 58.7
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 4.2e-46 188.3 141 68.1
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 9.3e-46 187.2 213 50.2
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.2e-45 186.8 145 64.8
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.6e-45 186.4 150 64.0
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 2.7e-45 185.7 120 75.8
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.7e-45 185.7 120 75.8
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.7e-45 185.7 144 63.9
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 4.6e-45 184.9 147 61.9
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 7.8e-45 184.1 147 66.0
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.3e-44 182.6 144 62.5
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.5e-43 179.1 145 61.4
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 4.3e-43 178.3 120 73.3
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 4.3e-43 178.3 120 73.3
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.6e-43 177.9 184 55.4
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.8e-42 175.6 148 61.5
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 4.8e-42 174.9 144 59.7
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 6.2e-42 174.5 116 73.3
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.1e-41 173.7 117 72.6
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.1e-41 173.7 144 61.8
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.2e-40 170.2 129 67.4
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.5e-40 169.9 145 63.4
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.3e-39 166.8 141 57.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.9e-39 165.6 127 66.9
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.4e-38 161.4 146 55.5
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 9.3e-38 160.6 127 67.7
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-37 160.2 127 65.4
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.2e-37 160.2 147 54.4
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.1e-37 159.5 141 57.4
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 3.5e-37 158.7 146 54.8
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 4.6e-37 158.3 129 62.8
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 2.4e-33 146.0 154 53.9
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 9.3e-30 134.0 94 70.2
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.9e-27 126.3 114 57.0
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 3.7e-26 122.1 91 69.2
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 6.2e-26 121.3 92 66.3
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.2e-23 112.8 145 44.1
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.7e-21 105.9 77 72.7
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.8e-20 103.2 143 37.8
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.8e-20 103.2 82 59.8
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 3.3e-19 99.0 74 66.2
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.3e-18 97.1 75 66.7
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.2e-18 96.3 71 66.2
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.7e-18 95.5 75 62.7
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.7e-18 95.5 75 62.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.9e-14 83.2 67 61.2
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-12 77.4 59 64.4
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-12 77.4 59 64.4
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.4e-12 77.0 83 43.4
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 7.4e-11 71.2 45 68.9
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 9.7e-11 70.9 58 60.3
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 9.7e-11 70.9 65 53.8
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 3.7e-10 68.9 46 67.4


User provided reference genes

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