Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 3.0e-84 315.1 155 100.0
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 9.6e-30 134.0 155 46.5
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 1.2e-27 127.1 155 44.5
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 1.0e-26 124.0 161 46.0
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.7e-26 123.2 153 46.4
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.7e-26 123.2 158 46.8
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.9e-26 122.5 156 44.2
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.1e-25 120.6 156 43.6
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.4e-25 120.2 160 43.8
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 2.5e-25 119.4 155 43.2
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.5e-25 119.4 161 44.7
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 3.2e-25 119.0 156 43.6
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 5.5e-25 118.2 157 44.6
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 9.3e-25 117.5 160 40.0
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 1.2e-24 117.1 155 40.6
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.1e-24 116.3 155 47.7
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 4.6e-24 115.2 152 43.4
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 6.0e-24 114.8 155 47.1
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 7.9e-24 114.4 155 41.3
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 1.8e-23 113.2 152 42.8
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.8e-23 113.2 152 42.1
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.3e-23 112.8 152 42.8
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 3.0e-23 112.5 155 44.5
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 3.9e-23 112.1 156 40.4
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 3.9e-23 112.1 155 41.9
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.7e-23 111.3 152 42.1
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 1.1e-22 110.5 159 42.8
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.1e-22 110.5 155 43.2
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.5e-22 110.2 152 41.4
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 1.9e-22 109.8 153 40.5
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.5e-22 109.4 154 41.6
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 9.6e-22 107.5 157 43.3
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 1.1e-20 104.0 159 40.9
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 2.4e-20 102.8 117 47.9
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 2.4e-20 102.8 163 39.3
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 2.4e-20 102.8 158 38.6
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 4.0e-20 102.1 156 38.5
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 1.2e-19 100.5 157 38.9
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 2.0e-19 99.8 155 40.0
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 4.5e-19 98.6 152 39.5
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 5.8e-19 98.2 162 39.5
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 7.6e-19 97.8 155 42.6
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 1.0e-18 97.4 155 35.5
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 1.0e-18 97.4 154 41.6
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 1.7e-18 96.7 154 44.8
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 8.4e-18 94.4 163 37.4
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 8.4e-18 94.4 160 41.2
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.9e-17 93.2 158 38.6
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 1.9e-17 93.2 164 37.8
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 2.5e-17 92.8 165 37.0
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 5.5e-17 91.7 119 41.2
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 9.3e-17 90.9 154 40.9
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 1.2e-16 90.5 105 48.6
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 1.6e-16 90.1 160 41.2
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 1.6e-16 90.1 150 34.7
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 2.1e-16 89.7 157 39.5
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 3.5e-16 89.0 153 34.6
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 4.6e-16 88.6 133 39.1
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 6.1e-16 88.2 159 37.7
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 6.1e-16 88.2 159 38.4
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 7.9e-16 87.8 159 41.5
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 1.0e-15 87.4 159 39.0
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 1.3e-15 87.0 152 36.8
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.1e-14 84.0 119 43.7
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 3.3e-14 82.4 162 35.8
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 3.3e-14 82.4 158 37.3
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 4.3e-14 82.0 170 34.7
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 4.3e-14 82.0 138 37.7
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 4.3e-14 82.0 162 35.2
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 5.7e-14 81.6 161 35.4
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 7.4e-14 81.3 147 38.8
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.3e-13 80.5 164 34.1
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 1.3e-13 80.5 160 33.1
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 2.8e-13 79.3 159 33.3
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 3.7e-13 79.0 160 35.6
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 4.8e-13 78.6 161 39.8
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 6.3e-13 78.2 157 35.0
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 1.1e-12 77.4 166 34.9
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.4e-12 77.0 163 36.8
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.4e-12 77.0 163 36.8
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.4e-12 77.0 163 36.8
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.8e-12 76.6 134 38.8
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 2.4e-12 76.3 167 37.1
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 3.1e-12 75.9 163 36.2
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 3.1e-12 75.9 163 36.2
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.1e-12 75.9 113 38.9
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 4.1e-12 75.5 84 46.4
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 9.0e-12 74.3 161 39.8
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 2.6e-11 72.8 163 35.0
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 1.3e-10 70.5 139 36.7
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 1.1e-09 67.4 173 30.6
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 3.2e-09 65.9 171 32.2
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 9.4e-09 64.3 169 33.7
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.2e-08 63.9 124 34.7
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 2.1e-08 63.2 167 31.7
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 3.6e-08 62.4 35 77.1
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 6.1e-08 61.6 35 74.3
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 1.4e-07 60.5 70 50.0
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 5.1e-07 58.5 128 32.8
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 1.1e-06 57.4 67 47.8
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 1.1e-06 57.4 67 47.8
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 1.5e-06 57.0 147 31.3
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.5e-06 57.0 66 43.9


User provided reference genes

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