Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01240 Coffea canephora HOM05D002593 ORTHO05D006476 4.0e-75 284.6 142 100.0
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 8.6e-09 64.3 48 64.6
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 1.1e-08 63.9 48 68.8
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 3.3e-08 62.4 56 58.9
Cc11_g02630 Coffea canephora HOM05D002593 ORTHO05D006476 9.5e-08 60.8 30 93.3
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 9.5e-08 60.8 48 64.6
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 1.6e-07 60.1 48 62.5
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 2.1e-07 59.7 56 57.1
CiPaw.07G076000 Carya illinoinensis HOM05D002593 ORTHO05D006476 2.8e-07 59.3 48 62.5
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 2.8e-07 59.3 50 62.0
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 2.8e-07 59.3 56 57.1
Cc11_g02030 Coffea canephora HOM05D002593 ORTHO05D006476 3.6e-07 58.9 44 70.5
Dinv07258 Davidia involucrata HOM05D002593 ORTHO05D006476 3.6e-07 58.9 48 62.5
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 3.6e-07 58.9 56 57.1
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 3.6e-07 58.9 56 57.1
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 3.6e-07 58.9 48 64.6
Eucgr.I00052 Eucalyptus grandis HOM05D002593 ORTHO05D006476 4.7e-07 58.5 55 56.4
Cfa002121 Carpinus fangiana HOM05D002593 ORTHO05D006476 6.1e-07 58.2 48 60.4
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 6.1e-07 58.2 56 57.1
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 8.0e-07 57.8 50 62.0
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 8.0e-07 57.8 48 58.3
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 8.0e-07 57.8 48 60.4
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 8.0e-07 57.8 48 62.5
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 8.0e-07 57.8 48 60.4
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 8.0e-07 57.8 44 65.9
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 8.0e-07 57.8 48 62.5
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.0e-06 57.4 56 57.1
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 1.4e-06 57.0 56 57.1
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 1.4e-06 57.0 48 60.4
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 1.4e-06 57.0 48 62.5
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 1.4e-06 57.0 48 62.5
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 1.8e-06 56.6 48 60.4
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 1.8e-06 56.6 44 65.9
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 1.8e-06 56.6 44 65.9
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 1.8e-06 56.6 44 65.9
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 1.8e-06 56.6 44 65.9
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 1.8e-06 56.6 44 65.9
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 1.8e-06 56.6 56 57.1
Manes.12G083900 Manihot esculenta HOM05D002593 ORTHO05D006476 1.8e-06 56.6 47 61.7
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 1.8e-06 56.6 44 65.9
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 1.8e-06 56.6 56 58.9
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 2.3e-06 56.2 44 65.9
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 2.3e-06 56.2 44 65.9
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 2.3e-06 56.2 48 62.5
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 2.3e-06 56.2 48 60.4
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 3.0e-06 55.8 56 55.4
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 3.0e-06 55.8 56 55.4
Cc00_g17650 Coffea canephora HOM05D067361 ORTHO05D006476 3.0e-06 55.8 29 82.8
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 3.0e-06 55.8 56 58.9
Lj1A109G43 Lonicera japonica HOM05D002593 ORTHO05D006476 3.0e-06 55.8 48 60.4
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 3.0e-06 55.8 56 57.1
Ca_17607_v3 Cicer arietinum L. HOM05D002593 ORTHO05D006476 4.0e-06 55.5 48 60.4
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 4.0e-06 55.5 48 60.4
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 4.0e-06 55.5 48 60.4
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 4.0e-06 55.5 48 60.4
Os03g0837900 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D006476 4.0e-06 55.5 48 58.3
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 4.0e-06 55.5 44 61.4
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 4.0e-06 55.5 48 60.4
TAR381G1378 Trochodendron aralioides HOM05D002593 ORTHO05D006476 4.0e-06 55.5 48 60.4
unitig_899.g14455 Utricularia gibba HOM05D002593 ORTHO05D006476 4.0e-06 55.5 49 57.1
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 5.2e-06 55.1 47 61.7
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea HOM05D002593 ORTHO05D006476 5.2e-06 55.1 48 58.3
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea HOM05D002593 ORTHO05D006476 5.2e-06 55.1 48 58.3
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 5.2e-06 55.1 44 63.6
Prupe.4G114800 Prunus persica HOM05D002593 ORTHO05D006476 5.2e-06 55.1 48 58.3
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 6.8e-06 54.7 48 58.3
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 6.8e-06 54.7 48 60.4
Glyma.06G158400 Glycine max HOM05D002593 ORTHO05D006476 6.8e-06 54.7 48 60.4
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 6.8e-06 54.7 48 58.3
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 6.8e-06 54.7 47 59.6
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 6.8e-06 54.7 47 59.6
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 6.8e-06 54.7 48 58.3
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 8.9e-06 54.3 47 57.4
Phvul.002G276400 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 8.9e-06 54.3 32 81.2
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 8.9e-06 54.3 48 58.3
Zm00001eb063890 Zea mays HOM05D002593 ORTHO05D006476 8.9e-06 54.3 48 58.3


User provided reference genes

Program Settings