Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.1e-33 146.0 70 100.0
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 7.4e-14 80.1 45 82.2
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 9.7e-14 79.7 45 80.0
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 1.3e-13 79.3 45 82.2
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 1.7e-13 79.0 45 77.8
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 1.7e-13 79.0 45 80.0
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.7e-13 79.0 45 77.8
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.2e-13 78.6 45 75.6
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.2e-13 78.6 45 75.6
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 2.8e-13 78.2 45 80.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 2.8e-13 78.2 45 77.8
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 3.7e-13 77.8 45 77.8
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 3.7e-13 77.8 45 80.0
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 3.7e-13 77.8 45 77.8
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 3.7e-13 77.8 45 77.8
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 3.7e-13 77.8 45 77.8
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 4.8e-13 77.4 45 77.8
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 4.8e-13 77.4 45 77.8
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 4.8e-13 77.4 45 77.8
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 4.8e-13 77.4 45 77.8
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 4.8e-13 77.4 45 82.2
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 8.2e-13 76.6 45 77.8
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 8.2e-13 76.6 45 80.0
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 8.2e-13 76.6 45 75.6
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 1.1e-12 76.3 45 77.8
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.1e-12 76.3 45 75.6
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.1e-12 76.3 42 81.0
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 1.4e-12 75.9 45 75.6
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-12 75.9 45 77.8
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-12 75.9 45 77.8
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-12 75.9 45 77.8
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.4e-12 75.9 45 77.8
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 1.4e-12 75.9 45 75.6
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.4e-12 75.9 42 81.0
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 1.4e-12 75.9 42 78.6
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 1.8e-12 75.5 45 75.6
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.8e-12 75.5 45 75.6
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 2.4e-12 75.1 45 77.8
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 3.1e-12 74.7 45 73.3
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 3.1e-12 74.7 42 78.6
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 3.1e-12 74.7 42 78.6
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 4.1e-12 74.3 45 73.3
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 5.3e-12 73.9 45 73.3
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 5.3e-12 73.9 45 71.1
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 5.3e-12 73.9 42 76.2
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 5.3e-12 73.9 42 76.2
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 5.3e-12 73.9 42 76.2
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 5.3e-12 73.9 45 71.1
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 5.3e-12 73.9 45 75.6
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 5.3e-12 73.9 42 76.2
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 5.3e-12 73.9 42 78.6
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 5.3e-12 73.9 42 76.2
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 5.3e-12 73.9 42 78.6
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 7.0e-12 73.6 45 71.1
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 7.0e-12 73.6 42 76.2
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 7.0e-12 73.6 42 76.2
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 7.0e-12 73.6 42 76.2
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 7.0e-12 73.6 42 76.2
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 7.0e-12 73.6 42 76.2
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 7.0e-12 73.6 72 52.8
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 9.1e-12 73.2 45 73.3
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 9.1e-12 73.2 42 76.2
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 9.1e-12 73.2 42 73.8
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 9.1e-12 73.2 72 54.2
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 1.2e-11 72.8 45 75.6
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 1.2e-11 72.8 45 75.6
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 1.2e-11 72.8 42 78.6
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 1.2e-11 72.8 72 51.4
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 1.6e-11 72.4 42 73.8
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 1.6e-11 72.4 72 50.0
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 2.0e-11 72.0 42 73.8
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 2.0e-11 72.0 42 73.8
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 2.0e-11 72.0 72 54.2
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 2.6e-11 71.6 42 78.6
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 51.4
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 51.4
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 51.4
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 2.6e-11 71.6 72 52.8
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 3.5e-11 71.2 72 51.4
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.5e-11 71.2 72 51.4
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 4.5e-11 70.9 42 73.8
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 4.5e-11 70.9 72 51.4
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 4.5e-11 70.9 72 51.4
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 4.5e-11 70.9 72 50.0
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 7.7e-11 70.1 47 72.3
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 1.0e-10 69.7 72 51.4
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 1.0e-10 69.7 45 71.1
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.3e-10 69.3 45 68.9
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.2e-10 68.6 72 50.0
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 2.2e-10 68.6 42 71.4
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 2.9e-10 68.2 42 66.7
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 5.0e-10 67.4 43 69.8
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 5.0e-10 67.4 45 66.7
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 5.0e-10 67.4 45 68.9
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 6.5e-10 67.0 42 71.4
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 8.5e-10 66.6 45 66.7
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.5e-09 65.9 43 69.8
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.2e-09 64.3 43 67.4
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 5.5e-09 63.9 45 66.7
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 5.5e-09 63.9 45 66.7
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 7.2e-09 63.5 45 64.4
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 7.2e-09 63.5 45 64.4
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 7.2e-09 63.5 43 67.4
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 9.4e-09 63.2 47 68.1
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 9.4e-09 63.2 42 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.2e-08 62.8 43 65.1
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.6e-08 61.2 43 65.1
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 1.0e-07 59.7 68 51.5
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.4e-07 59.3 73 45.2
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 1.8e-07 58.9 43 62.8
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 5.2e-07 57.4 43 60.5
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 8.8e-07 56.6 43 58.1
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 8.8e-07 56.6 43 55.8
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 4.4e-06 54.3 42 57.1
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.7e-06 53.9 50 58.0


User provided reference genes

Program Settings