Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00930 Coffea canephora HOM05D007400 ORTHO05D009351 1.2e-129 466.5 234 100.0
Cc09_g06320 Coffea canephora HOM05D007400 ORTHO05D009351 5.4e-93 344.7 198 90.9
Oeu050064.1 Olea europaea HOM05D007400 ORTHO05D009351 1.8e-72 276.6 193 75.6
Peaxi162Scf00149g01015 Petunia axillaris HOM05D007400 ORTHO05D009351 1.3e-67 260.4 217 65.9
Actinidia11209 Actinidia chinensis HOM05D007400 ORTHO05D009351 2.3e-67 259.6 217 66.4
CiPaw.10G065400 Carya illinoinensis HOM05D007400 ORTHO05D009351 2.5e-66 256.1 186 72.0
Cfa000725 Carpinus fangiana HOM05D007400 ORTHO05D009351 7.4e-66 254.6 208 65.4
Lj2A352T41 Lonicera japonica HOM05D007400 ORTHO05D009351 9.6e-66 254.2 205 66.8
Migut.L00012 Erythranthe guttata HOM05D007400 ORTHO05D009351 2.1e-65 253.1 196 68.9
MD00G1111500 Malus domestica HOM05D007400 ORTHO05D009351 3.7e-65 252.3 192 68.8
Solyc02g069130.3 Solanum lycopersicum HOM05D007400 ORTHO05D009351 4.8e-65 251.9 197 67.0
CANSAT11G1633 Cannabis sativa HOM05D007400 ORTHO05D009351 6.2e-65 251.5 187 70.6
Sopen02g018260 Solanum pennellii HOM05D007400 ORTHO05D009351 6.2e-65 251.5 197 66.5
CAN.G1222.5 Capsicum annuum HOM05D007400 ORTHO05D009351 1.1e-64 250.8 194 67.0
TAR626G1335 Trochodendron aralioides HOM05D007400 ORTHO05D009351 1.8e-64 250.0 194 68.6
RcHm_v2.0_Chr4g0402661 Rosa chinensis HOM05D007400 ORTHO05D009351 3.1e-64 249.2 195 65.6
Duzib192G0901 Durio zibethinus HOM05D007400 ORTHO05D009351 4.0e-64 248.8 236 59.7
Lj5g0000759 Lotus japonicus HOM05D007400 ORTHO05D009351 9.0e-64 247.7 200 66.5
Hma1.2p1_0040F.1_g025040 Hydrangea macrophylla HOM05D007400 ORTHO05D009351 2.6e-63 246.1 233 60.5
TWI63G0941 Tripterygium wilfordii HOM05D007400 ORTHO05D009351 2.6e-63 246.1 197 67.5
arahy.Tifrunner.gnm1.ann1.ARB9WH Arachis hypogaea HOM05D007400 ORTHO05D009351 3.4e-63 245.7 210 64.3
FvH4_4g09390 Fragaria vesca HOM05D007400 ORTHO05D009351 3.4e-63 245.7 205 63.9
Gorai.009G151100 Gossypium raimondii HOM05D007400 ORTHO05D009351 4.5e-63 245.4 178 71.3
Glyma.10G066600 Glycine max HOM05D007400 ORTHO05D009351 1.0e-62 244.2 205 62.9
unitig_61.g26077 Utricularia gibba HOM05D007400 ORTHO05D009351 1.0e-62 244.2 208 63.9
arahy.Tifrunner.gnm1.ann1.L1RKW0 Arachis hypogaea HOM05D007400 ORTHO05D009351 1.3e-62 243.8 210 63.8
Cpa.g.sc135.34 Carica papaya HOM05D007400 ORTHO05D009351 1.3e-62 243.8 218 61.9
Medtr1g061080 Medicago truncatula HOM05D007400 ORTHO05D009351 1.3e-62 243.8 188 69.1
Gohir.D05G147100 Gossypium hirsutum HOM05D007400 ORTHO05D009351 1.7e-62 243.4 176 71.6
vmacro11006 Vaccinium macrocarpon HOM05D007400 ORTHO05D009351 1.7e-62 243.4 248 58.5
Carub.0007s2138 Capsella rubella HOM05D007400 ORTHO05D009351 2.9e-62 242.7 195 63.1
Potri.012G119800 Populus trichocarpa HOM05D007400 ORTHO05D009351 2.9e-62 242.7 197 64.0
CARHR226600 Cardamine hirsuta HOM05D007400 ORTHO05D009351 3.8e-62 242.3 194 64.9
Ciclev10016614m.g Citrus clementina HOM05D007400 ORTHO05D009351 3.8e-62 242.3 148 81.8
FAN22G1838 Fragaria x ananassa HOM05D007400 ORTHO05D009351 3.8e-62 242.3 206 63.1
Gohir.A05G144700 Gossypium hirsutum HOM05D007400 ORTHO05D009351 3.8e-62 242.3 175 72.0
THA.LOC104811504 Tarenaya hassleriana HOM05D007400 ORTHO05D009351 4.9e-62 241.9 160 73.1
CDE05G1756 Ceratophyllum demersum HOM05D007400 ORTHO05D009351 8.4e-62 241.1 173 71.1
GSVIVG01012101001 Vitis vinifera HOM05D007400 ORTHO05D009351 1.1e-61 240.7 184 69.0
C03p82350 Brassica napus HOM05D007400 ORTHO05D009351 1.4e-61 240.4 205 61.0
BcaC01g00636 Brassica carinata HOM05D007400 ORTHO05D009351 2.5e-61 239.6 205 60.5
BolC3t20518H Brassica oleracea HOM05D007400 ORTHO05D009351 2.5e-61 239.6 205 60.5
AUR62011827 Chenopodium quinoa HOM05D007400 ORTHO05D009351 5.5e-61 238.4 172 71.5
AT4G19830 Arabidopsis thaliana HOM05D007400 ORTHO05D009351 7.1e-61 238.0 184 65.8
A08p14510 Brassica napus HOM05D007400 ORTHO05D009351 9.3e-61 237.7 177 68.4
BraA08t33439Z Brassica rapa HOM05D007400 ORTHO05D009351 9.3e-61 237.7 177 68.4
PGR042G1002 Punica granatum HOM05D007400 ORTHO05D009351 9.3e-61 237.7 202 66.3
Thhalv10026156m.g Eutrema salsugineum HOM05D007400 ORTHO05D009351 1.2e-60 237.3 184 65.8
DCAR_003791 Daucus carota HOM05D007400 ORTHO05D009351 1.6e-60 236.9 196 64.8
Lalb_Chr09g0328751 Lupinus albus HOM05D007400 ORTHO05D009351 2.1e-60 236.5 215 60.9
Sp7g18330 Schrenkiella parvula HOM05D007400 ORTHO05D009351 2.7e-60 236.1 195 62.6
TPR.G5680 Trifolium pratense HOM05D007400 ORTHO05D009351 3.5e-60 235.7 185 67.6
Nn7g38084 Nelumbo nucifera HOM05D007400 ORTHO05D009351 4.6e-60 235.3 205 63.4
BcaB03g11643 Brassica carinata HOM05D007400 ORTHO05D009351 6.0e-60 235.0 207 61.4
HanXRQChr15g0487331 Helianthus annuus HOM05D007400 ORTHO05D009351 6.0e-60 235.0 208 60.1
VMungo0720G1846 Vigna mungo HOM05D007400 ORTHO05D009351 6.0e-60 235.0 207 61.8
Phvul.007G223000 Phaseolus vulgaris HOM05D007400 ORTHO05D009351 1.0e-59 234.2 206 61.7
Haze_06019 Corylus avellana HOM05D007400 ORTHO05D009351 1.8e-59 233.4 217 58.1
Eucgr.E01894 Eucalyptus grandis HOM05D007400 ORTHO05D009351 2.3e-59 233.0 215 60.0
Atru.chr10.612 Acer truncatum HOM05D007400 ORTHO05D009351 8.7e-59 231.1 233 58.8
Aa31LG6G2310 Aethionema arabicum HOM05D007400 ORTHO05D009351 1.9e-58 229.9 155 72.9
Lsat_1_v5_gn_8_117760 Lactuca sativa HOM05D007400 ORTHO05D009351 1.9e-58 229.9 217 59.4
PSO675G6700 Papaver somniferum HOM05D007400 ORTHO05D009351 2.5e-58 229.6 220 57.7
Os02g0168700 Oryza sativa ssp. japonica HOM05D007400 ORTHO05D009351 3.3e-58 229.2 149 73.2
Zm00001eb207360 Zea mays HOM05D007400 ORTHO05D009351 3.3e-58 229.2 148 73.6
Sed0027636 Sechium edule HOM05D007400 ORTHO05D009351 4.3e-58 228.8 218 58.3
ATR0763G247 Amborella trichopoda HOM05D007400 ORTHO05D009351 9.6e-58 227.6 231 55.0
MELO3C021776.2 Cucumis melo HOM05D007400 ORTHO05D009351 1.6e-57 226.9 196 60.2
ECA232G4176 Erigeron canadensis HOM05D007400 ORTHO05D009351 2.1e-57 226.5 189 62.4
ClCG01G009370 Citrullus lanatus HOM05D007400 ORTHO05D009351 2.8e-57 226.1 198 57.6
CsaV3_1G046550 Cucumis sativus L. HOM05D007400 ORTHO05D009351 4.8e-57 225.3 186 61.8
Ca_11627_v3 Cicer arietinum L. HOM05D007400 ORTHO05D009351 3.1e-56 222.6 187 64.7
Manes.16G059200 Manihot esculenta HOM05D007400 ORTHO05D009351 9.0e-56 221.1 251 53.0
CSS0009058 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 2.2e-54 216.5 121 84.3
CSS0000937 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 2.9e-54 216.1 121 85.1
QL11p018093 Quercus lobata HOM05D007400 ORTHO05D009351 7.2e-53 211.5 119 82.4
Thecc.06G140800 Theobroma cacao HOM05D007400 ORTHO05D009351 6.1e-52 208.4 119 82.4
SMO270G0023 Selaginella moellendorffii HOM05D007400 ORTHO05D009351 3.0e-51 206.1 145 68.3
Mapoly0025s0105 Marchantia polymorpha HOM05D007400 ORTHO05D009351 3.9e-51 205.7 196 56.6
Nitab4.5_0017218g0010 Nicotiana tabacum HOM05D007400 ORTHO05D009351 6.7e-51 204.9 114 83.3
CSS0044125 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 2.2e-49 199.9 169 65.7
Pp3c2_2300 Physcomitrium patens HOM05D007400 ORTHO05D009351 3.7e-49 199.1 148 66.9
AagrBONN_evm.TU.Sc2ySwM_344.2066 Anthoceros agrestis HOM05D003486 ORTHO05D004600 6.3e-49 198.4 188 53.7
Sc05g0000500 Simmondsia chinensis HOM05D007400 ORTHO05D009351 1.8e-48 196.8 117 76.1
MBI09_g28984_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 3.1e-48 196.1 212 51.4
MBI09_g37060_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 1.9e-45 186.8 164 59.1
CSS0019726 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 1.1e-42 177.6 148 66.2
Prupe.1G087100 Prunus persica HOM05D007400 ORTHO05D009351 2.6e-42 176.4 153 62.1
Rhsim02G0169200 Rhododendron simsii HOM05D007400 ORTHO05D009351 4.4e-42 175.6 277 42.2
Dinv04112 Davidia involucrata HOM05D007400 ORTHO05D009351 5.7e-42 175.3 156 60.9
PSO675G3258 Papaver somniferum HOM05D007400 ORTHO05D009351 2.2e-41 173.3 132 67.4
COL.COLO4_30978 Corchorus olitorius HOM05D000065 ORTHO05D001606 6.3e-41 171.8 154 61.7
AL7G34250 Arabidopsis lyrata HOM05D007400 ORTHO05D009351 6.9e-40 168.3 146 59.6
FAN12G2033 Fragaria x ananassa HOM05D007400 ORTHO05D009351 9.1e-40 167.9 166 56.6
SGA_v2.0_scaffold341G49377 Striga asiatica HOM05D007400 ORTHO05D009351 9.1e-40 167.9 223 48.4
Psat6g078400 Pisum sativum HOM05D007400 ORTHO05D009351 3.8e-38 162.5 172 55.2
Sabra12G0089100 Salix brachista HOM05D007400 ORTHO05D009351 3.8e-38 162.5 196 49.5
Migut.C00263 Erythranthe guttata HOM05D007400 ORTHO05D009351 1.6e-36 157.1 88 85.2
MBI08_g39084_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 1.5e-34 150.6 181 50.3
AUR62024671 Chenopodium quinoa HOM05D007400 ORTHO05D009351 1.3e-33 147.5 174 49.4
EL10As5g23512 Beta vulgaris HOM05D007400 ORTHO05D009351 3.7e-33 146.0 237 42.2
Ah.02g112190 Amaranthus hybridus HOM05D007400 ORTHO05D009351 2.9e-30 136.3 78 78.2
Nitab4.5_0002056g0010 Nicotiana tabacum HOM05D007400 ORTHO05D009351 2.8e-25 119.8 116 60.3
Thecc.06G140000 Theobroma cacao HOM05D007400 ORTHO05D009351 8.5e-22 108.2 124 54.8
Ah.02g112200 Amaranthus hybridus HOM05D007400 ORTHO05D009351 6.1e-20 102.1 89 66.3
AL7G34270 Arabidopsis lyrata HOM05D000741 ORTHO05D000506 4.7e-12 75.9 110 41.8
MBI03_g31611_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 9.8e-10 68.2 38 84.2
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 3.7e-09 66.2 234 28.6
ATR0582G095 Amborella trichopoda HOM05D002468 ORTHO05D009172 8.3e-09 65.1 184 28.3
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis HOM05D002468 ORTHO05D009172 1.8e-08 63.9 162 29.6
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 4.1e-08 62.8 155 29.0
AagrBONN_evm.TU.Sc2ySwM_368.1220 Anthoceros agrestis HOM05D007127 ORTHO05D008803 5.4e-08 62.4 188 29.8
TAR629G1911 Trochodendron aralioides HOM05D001907 ORTHO05D002387 5.4e-08 62.4 136 33.1
AUR62017717 Chenopodium quinoa HOM05D001907 ORTHO05D002387 7.0e-08 62.0 104 36.5
Zm00001eb423420 Zea mays HOM05D001907 ORTHO05D002387 1.2e-07 61.2 142 31.7
CiPaw.04G062600 Carya illinoinensis HOM05D001907 ORTHO05D002387 1.6e-07 60.8 144 32.6
ECA248G1653 Erigeron canadensis HOM05D000371 ORTHO05D001484 1.6e-07 60.8 103 39.8
QL12p039655 Quercus lobata HOM05D001907 ORTHO05D002387 2.0e-07 60.5 142 31.0
ATR0810G174 Amborella trichopoda HOM05D001907 ORTHO05D002387 3.5e-07 59.7 104 35.6
CSS0007797 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D001484 3.5e-07 59.7 105 36.2
CSS0012168 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D001484 3.5e-07 59.7 105 36.2
AUR62032962 Chenopodium quinoa HOM05D001907 ORTHO05D002387 3.5e-07 59.7 105 37.1
Cre12.g534700 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 3.5e-07 59.7 152 31.6
Pp3c16_12110 Physcomitrium patens HOM05D002468 ORTHO05D009172 3.5e-07 59.7 208 26.4
SMO356G0109 Selaginella moellendorffii HOM05D007127 ORTHO05D008803 3.5e-07 59.7 129 33.3
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 4.5e-07 59.3 146 30.1
AL6G14810 Arabidopsis lyrata HOM05D001907 ORTHO05D011102 5.9e-07 58.9 130 30.0
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 5.9e-07 58.9 181 26.5
Mapoly0084s0048 Marchantia polymorpha HOM05D001907 ORTHO05D002387 7.8e-07 58.5 159 32.1
Sed0015828 Sechium edule HOM05D001907 ORTHO05D002387 7.8e-07 58.5 163 31.3
AUR62016106 Chenopodium quinoa HOM05D001907 ORTHO05D002387 1.0e-06 58.2 130 33.8
FAN25G0358 Fragaria x ananassa HOM05D007127 ORTHO05D008803 1.0e-06 58.2 146 31.5
Gorai.002G103100 Gossypium raimondii HOM05D007127 ORTHO05D008803 1.0e-06 58.2 141 29.1
THA.LOC104811685 Tarenaya hassleriana HOM05D007127 ORTHO05D008803 1.0e-06 58.2 178 25.3
Ah.03g147900 Amaranthus hybridus HOM05D001907 ORTHO05D002387 1.3e-06 57.8 104 33.7
Lj6g0006308 Lotus japonicus HOM05D007127 ORTHO05D008803 1.3e-06 57.8 141 29.1
PGR031G0197 Punica granatum HOM05D001907 ORTHO05D002387 1.3e-06 57.8 168 31.0
Thecc.03G161100 Theobroma cacao HOM05D001907 ORTHO05D002387 1.3e-06 57.8 107 38.3
TAR636G0269 Trochodendron aralioides HOM05D001907 ORTHO05D002387 1.3e-06 57.8 105 37.1
VMungo1215G3103 Vigna mungo HOM05D001907 ORTHO05D002387 1.3e-06 57.8 102 38.2
CBR_g49113 Chara braunii HOM05D001907 ORTHO05D002387 1.7e-06 57.4 167 29.3
Gohir.D01G078500 Gossypium hirsutum HOM05D007127 ORTHO05D008803 1.7e-06 57.4 141 29.1
Lsat_1_v5_gn_1_69221 Lactuca sativa HOM05D000371 ORTHO05D001484 1.7e-06 57.4 103 38.8
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 1.7e-06 57.4 170 27.1
Nn4g26408 Nelumbo nucifera HOM05D001907 ORTHO05D002387 1.7e-06 57.4 143 32.2
GSVIVG01014748001 Vitis vinifera HOM05D007127 ORTHO05D008803 1.7e-06 57.4 141 29.1
Aqoxy1G04096 Aquilegia oxysepala HOM05D007127 ORTHO05D008803 2.3e-06 57.0 152 30.3
EL10Ac9g22970 Beta vulgaris HOM05D001907 ORTHO05D002387 2.3e-06 57.0 104 34.6
GSVIVG01018518001 Vitis vinifera HOM05D001907 ORTHO05D002387 2.3e-06 57.0 103 35.9
Actinidia02935 Actinidia chinensis HOM05D000371 ORTHO05D008019 2.9e-06 56.6 154 31.2
CANSAT11G1343 Cannabis sativa HOM05D007127 ORTHO05D008803 2.9e-06 56.6 146 29.5
CDE01G0029 Ceratophyllum demersum HOM05D001907 ORTHO05D002387 2.9e-06 56.6 174 32.8
DCAR_013258 Daucus carota HOM05D007127 ORTHO05D008803 2.9e-06 56.6 146 29.5
MD12G1101900 Malus domestica HOM05D001775 ORTHO05D008700 2.9e-06 56.6 175 30.3
Prupe.7G122200 Prunus persica HOM05D000031 ORTHO05D001864 2.9e-06 56.6 154 32.5
RcHm_v2.0_Chr3g0471471 Rosa chinensis HOM05D001775 ORTHO05D008700 2.9e-06 56.6 197 29.9
BraA01t01618Z Brassica rapa HOM05D001907 ORTHO05D002387 3.8e-06 56.2 103 37.9
CBR_g18725 Chara braunii HOM05D001907 ORTHO05D002387 3.8e-06 56.2 177 29.4
COL.COLO4_14177 Corchorus olitorius HOM05D001907 ORTHO05D002387 3.8e-06 56.2 88 42.0
DCAR_020207 Daucus carota HOM05D001907 ORTHO05D002387 3.8e-06 56.2 107 37.4
FvH4_6g17331 Fragaria vesca HOM05D001775 ORTHO05D008700 3.8e-06 56.2 176 30.1
Gohir.A01G094000 Gossypium hirsutum HOM05D007127 ORTHO05D008803 3.8e-06 56.2 141 29.1
Gohir.A09G044100 Gossypium hirsutum HOM05D001907 ORTHO05D002387 3.8e-06 56.2 131 33.6
RcHm_v2.0_Chr5g0075531 Rosa chinensis HOM05D007127 ORTHO05D008803 3.8e-06 56.2 146 30.8
Thecc.07G007600 Theobroma cacao HOM05D007127 ORTHO05D008803 3.8e-06 56.2 141 28.4
TWI38G0343 Tripterygium wilfordii HOM05D000371 ORTHO05D008019 3.8e-06 56.2 149 30.9
Lsat_1_v5_gn_9_52620 Lactuca sativa HOM05D001907 ORTHO05D002387 5.0e-06 55.8 142 28.2
Lj8A180T97 Lonicera japonica HOM05D007127 ORTHO05D008803 5.0e-06 55.8 139 29.5
Nitab4.5_0000072g0450 Nicotiana tabacum HOM05D001907 ORTHO05D002387 5.0e-06 55.8 141 31.2
Potri.012G129200 Populus trichocarpa HOM05D001907 ORTHO05D002387 5.0e-06 55.8 143 30.8
Sabra12G0097100 Salix brachista HOM05D001907 ORTHO05D002387 5.0e-06 55.8 143 30.8
Atru.chr1.639 Acer truncatum HOM05D001907 ORTHO05D002387 6.6e-06 55.5 168 29.2
A01p16640 Brassica napus HOM05D001907 ORTHO05D002387 6.6e-06 55.5 103 36.9
CSS0034181 Camellia sinensis var. sinensis HOM05D001907 ORTHO05D002387 6.6e-06 55.5 107 36.4
AUR62017126 Chenopodium quinoa HOM05D007127 ORTHO05D008803 6.6e-06 55.5 129 31.0
AUR62035684 Chenopodium quinoa HOM05D007127 ORTHO05D008803 6.6e-06 55.5 129 31.0
Duzib205G0190 Durio zibethinus HOM05D001907 ORTHO05D002387 6.6e-06 55.5 131 33.6
Gohir.D09G045400 Gossypium hirsutum HOM05D001907 ORTHO05D002387 6.6e-06 55.5 131 33.6
Gorai.006G065000 Gossypium raimondii HOM05D001907 ORTHO05D002387 6.6e-06 55.5 131 33.6
RcHm_v2.0_Chr1g0375081 Rosa chinensis HOM05D001907 ORTHO05D002387 6.6e-06 55.5 133 30.8
SMO367G0543 Selaginella moellendorffii HOM05D001775 ORTHO05D008700 6.6e-06 55.5 136 30.1
Sc07g0002120 Simmondsia chinensis HOM05D001907 ORTHO05D002387 6.6e-06 55.5 104 31.7
Ah.07g208230 Amaranthus hybridus HOM05D001907 ORTHO05D002387 8.6e-06 55.1 103 35.0
Eucgr.B01534 Eucalyptus grandis HOM05D001907 ORTHO05D002387 8.6e-06 55.1 145 31.7


User provided reference genes

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