Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 4.0e-54 214.5 112 100.0
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.0e-28 130.2 67 92.5
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.6e-24 115.5 67 80.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 4.4e-24 114.8 67 77.6
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-24 114.8 67 82.1
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-24 114.8 67 82.1
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-24 114.8 67 82.1
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-24 114.8 67 82.1
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-24 114.8 67 82.1
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-24 114.8 67 82.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.7e-24 114.4 67 80.6
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 5.7e-24 114.4 67 77.6
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 9.7e-24 113.6 67 80.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 9.7e-24 113.6 67 80.6
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.3e-23 113.2 67 79.1
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.7e-23 112.8 67 77.6
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.7e-23 112.8 67 79.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.2e-23 112.5 67 80.6
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 2.2e-23 112.5 67 80.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.2e-23 112.5 67 82.1
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.8e-23 112.1 65 78.5
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.8e-23 112.1 67 76.1
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.8e-23 112.1 67 79.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.7e-23 111.7 67 80.6
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 4.8e-23 111.3 67 77.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 4.8e-23 111.3 67 79.1
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.8e-23 111.3 67 77.6
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 8.2e-23 110.5 67 77.6
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 8.2e-23 110.5 67 77.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 8.2e-23 110.5 67 76.1
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 8.2e-23 110.5 67 76.1
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 8.2e-23 110.5 67 79.1
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.1e-22 110.2 67 77.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.1e-22 110.2 67 79.1
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.1e-22 110.2 67 77.6
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.4e-22 109.8 67 74.6
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.4e-22 109.8 67 80.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.4e-22 109.8 67 77.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 76.1
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 76.1
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 74.6
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 74.6
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 74.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 74.6
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 79.1
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.8e-22 109.4 67 74.6
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 76.1
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 76.1
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 74.6
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 76.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 76.1
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 76.1
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 74.6
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 74.6
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.4e-22 109.0 67 73.1
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.1e-22 108.6 67 76.1
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.1e-22 108.6 67 77.6
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 3.1e-22 108.6 67 77.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.1e-22 108.6 67 77.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.1e-22 108.2 67 77.6
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.1e-22 108.2 67 74.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 74.6
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 76.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 76.1
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 74.6
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 74.6
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 77.6
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 74.6
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 5.3e-22 107.8 67 74.6
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 7.0e-22 107.5 67 76.1
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 9.1e-22 107.1 67 77.6
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 9.1e-22 107.1 67 77.6
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-21 106.7 67 74.6
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.2e-21 106.7 67 74.6
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.2e-21 106.7 67 76.1
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.2e-21 106.7 67 74.6
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.2e-21 106.7 67 74.6
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.2e-21 106.7 67 76.1
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.2e-21 106.7 67 73.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.6e-21 106.3 67 76.1
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.6e-21 106.3 67 74.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.6e-21 106.3 67 74.6
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.6e-21 106.3 67 76.1
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.6e-21 106.3 67 74.6
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.6e-21 106.3 67 73.1
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.6e-21 105.5 67 74.6
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.6e-21 105.5 67 74.6
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.6e-21 105.5 67 73.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.6e-21 105.5 67 74.6
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.6e-21 105.5 67 74.6
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 3.5e-21 105.1 67 74.6
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 3.5e-21 105.1 67 74.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.5e-21 105.1 67 73.1
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 3.5e-21 105.1 67 74.6
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.5e-21 105.1 67 73.1
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.5e-21 104.8 67 76.1
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.5e-21 104.8 67 74.6
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 4.5e-21 104.8 81 69.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 4.5e-21 104.8 67 73.1
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 4.5e-21 104.8 67 74.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 5.9e-21 104.4 67 73.1
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 5.9e-21 104.4 67 73.1
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.9e-21 104.4 67 74.6
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 5.9e-21 104.4 67 74.6
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 5.9e-21 104.4 67 74.6
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.7e-21 104.0 67 73.1
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 7.7e-21 104.0 67 73.1
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 7.7e-21 104.0 67 76.1
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.0e-20 103.6 67 74.6
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.0e-20 103.6 67 73.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.3e-20 103.2 67 73.1
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.7e-20 102.8 67 71.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.2e-20 102.4 67 71.6
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 2.2e-20 102.4 67 71.6
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 2.2e-20 102.4 67 71.6
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.9e-20 102.1 67 71.6
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.9e-20 102.1 67 71.6
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.8e-20 101.7 67 71.6
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 3.8e-20 101.7 67 71.6
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 5.0e-20 101.3 67 70.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 5.0e-20 101.3 67 70.1
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-19 100.1 68 72.1
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.9e-19 99.4 67 70.1
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.2e-19 98.6 67 73.1
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.2e-19 98.6 67 64.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 3.2e-19 98.6 67 67.2
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 4.2e-19 98.2 86 60.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 7.2e-19 97.4 67 65.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 7.2e-19 97.4 67 65.7
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.2e-18 96.7 96 53.1
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.6e-18 95.1 67 59.7
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.6e-18 95.1 67 68.7
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 5.2e-17 91.3 67 67.2
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.6e-16 89.0 69 62.3
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.6e-16 89.0 69 62.3
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 2.2e-15 85.9 67 64.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.8e-14 82.8 67 59.7
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.9e-12 75.5 69 53.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.1e-10 69.3 47 72.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 6.1e-10 67.8 37 89.2
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.4e-09 66.6 36 91.7
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.4e-09 66.6 36 88.9
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-09 66.6 36 91.7
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 4.0e-09 65.1 36 88.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.0e-08 62.8 36 83.3
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 4.4e-08 61.6 40 75.0
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 9.8e-08 60.5 36 83.3


User provided reference genes

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