Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 4.2e-69 264.6 139 100.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.0e-46 188.0 112 87.5
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 8.0e-44 180.6 113 85.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.8e-43 179.5 112 84.8
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.6e-20 102.1 121 52.9
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.4e-19 99.4 124 52.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.1e-19 99.0 121 47.9
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 6.8e-19 97.8 120 48.3
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.2e-18 97.1 120 50.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.2e-18 97.1 120 48.3
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 9.3e-16 87.4 114 50.9
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 9.3e-16 87.4 114 51.8
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 9.3e-16 87.4 114 51.8
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.6e-15 86.7 115 50.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 3.9e-14 82.0 122 48.4
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 3.9e-14 82.0 120 47.5
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 5.1e-14 81.6 112 47.3
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 8.7e-14 80.9 113 46.0
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.5e-13 80.1 112 45.5
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 4.3e-13 78.6 110 48.2
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.3e-13 78.6 120 46.7
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 5.6e-13 78.2 118 47.5
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 7.3e-13 77.8 113 44.2
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 9.6e-13 77.4 113 44.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.6e-12 76.6 117 47.0
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.1e-12 76.3 114 46.5
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.6e-12 75.5 110 49.1
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 3.6e-12 75.5 113 48.7
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 6.2e-12 74.7 112 42.9
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.4e-11 73.6 119 44.5
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.4e-11 73.6 117 43.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.8e-11 73.2 113 42.5
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 6.9e-11 71.2 120 45.0
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.2e-10 70.5 119 42.0
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.0e-10 69.7 108 47.2
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.0e-10 69.7 118 43.2
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.0e-10 69.7 117 43.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.0e-10 69.7 112 42.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 4.4e-10 68.6 112 48.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.4e-10 68.6 115 46.1
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 5.8e-10 68.2 118 43.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 5.8e-10 68.2 119 41.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 7.6e-10 67.8 113 46.9
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.3e-09 67.0 113 40.7
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.3e-09 67.0 108 49.1
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.3e-09 67.0 129 45.0
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.7e-09 66.6 120 38.3
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.2e-09 66.2 109 48.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 3.8e-09 65.5 107 47.7
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.9e-09 65.1 89 49.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.9e-09 65.1 89 49.4
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 6.4e-09 64.7 108 48.1
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 8.4e-09 64.3 107 45.8
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 8.4e-09 64.3 115 40.9
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.1e-08 63.9 106 40.6
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.1e-08 63.9 112 40.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.4e-08 63.5 124 42.7
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.9e-08 63.2 115 40.9
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.9e-08 63.2 123 44.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.4e-08 62.8 106 47.2
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.4e-08 62.8 106 47.2
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 2.4e-08 62.8 112 40.2
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 3.2e-08 62.4 106 46.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 3.2e-08 62.4 85 42.4
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 3.2e-08 62.4 106 39.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 4.2e-08 62.0 107 44.9
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 4.2e-08 62.0 119 39.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 5.4e-08 61.6 123 40.7
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 5.4e-08 61.6 117 39.3
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.1e-08 61.2 115 40.0
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 7.1e-08 61.2 125 42.4
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.1e-08 61.2 125 42.4
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.1e-08 61.2 125 42.4
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 9.3e-08 60.8 121 43.0
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 9.3e-08 60.8 120 42.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.2e-07 60.5 115 40.9
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.6e-07 60.1 125 42.4
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.6e-07 60.1 110 40.9
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.1e-07 59.7 110 46.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.1e-07 59.7 106 46.2
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 2.1e-07 59.7 108 40.7
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.7e-07 59.3 109 42.2
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.5e-07 58.9 117 41.0
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.5e-07 58.9 113 40.7
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 3.5e-07 58.9 110 40.0
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.5e-07 58.9 119 42.9
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 4.6e-07 58.5 113 38.1
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.6e-07 58.5 84 45.2
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 4.6e-07 58.5 78 43.6
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 6.0e-07 58.2 118 41.5
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.0e-06 57.4 115 40.0
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.3e-06 57.0 118 40.7
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.7e-06 56.6 113 40.7
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.3e-06 56.2 129 45.0
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.0e-06 55.8 108 40.7
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 3.9e-06 55.5 125 37.6
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 5.1e-06 55.1 107 38.3
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.7e-06 54.3 112 36.6


User provided reference genes

Program Settings