Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 3.1e-47 191.4 94 100.0
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 5.6e-41 170.6 92 89.1
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 5.6e-41 170.6 94 86.2
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 5.6e-41 170.6 94 84.0
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 9.6e-41 169.9 94 87.2
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.3e-40 169.5 94 84.0
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.6e-40 169.1 94 87.2
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 2.1e-40 168.7 94 84.0
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.1e-40 168.7 94 84.0
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 2.8e-40 168.3 92 88.0
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 2.8e-40 168.3 92 88.0
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 2.8e-40 168.3 92 88.0
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 3.6e-40 167.9 94 85.1
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 4.8e-40 167.5 94 86.2
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 4.8e-40 167.5 94 84.0
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 6.2e-40 167.2 94 83.0
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 6.2e-40 167.2 92 85.9
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 6.2e-40 167.2 94 85.1
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.1e-39 166.4 94 83.0
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.1e-39 166.4 94 83.0
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.1e-39 166.4 94 83.0
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.8e-39 165.6 94 81.9
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.8e-39 165.6 94 83.0
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.8e-39 165.6 94 85.1
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.8e-39 165.6 92 84.8
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.8e-39 165.6 94 84.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 2.4e-39 165.2 94 84.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 3.1e-39 164.9 94 81.9
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 3.1e-39 164.9 94 81.9
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 3.1e-39 164.9 94 81.9
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 4.0e-39 164.5 94 84.0
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 4.0e-39 164.5 92 84.8
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 4.0e-39 164.5 94 83.0
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 5.3e-39 164.1 94 81.9
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 6.9e-39 163.7 94 83.0
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 6.9e-39 163.7 94 83.0
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 6.9e-39 163.7 94 81.9
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 9.0e-39 163.3 94 83.0
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 9.0e-39 163.3 92 82.6
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 9.0e-39 163.3 94 81.9
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 9.0e-39 163.3 94 84.0
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 9.0e-39 163.3 94 84.0
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 9.0e-39 163.3 94 84.0
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 9.0e-39 163.3 94 81.9
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 9.0e-39 163.3 92 83.7
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.5e-38 162.5 94 78.7
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.5e-38 162.5 92 82.6
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.5e-38 162.5 98 82.7
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 2.0e-38 162.2 94 81.9
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 4.5e-38 161.0 94 79.8
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 9.9e-38 159.8 94 79.8
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 9.9e-38 159.8 92 80.4
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 1.3e-37 159.5 92 81.5
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.3e-37 159.5 94 80.9
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.3e-37 159.5 92 81.5
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 1.7e-37 159.1 93 79.6
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 2.9e-37 158.3 94 78.7
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 3.8e-37 157.9 92 79.3
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 3.8e-37 157.9 94 79.8
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 4.9e-37 157.5 94 78.7
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 4.9e-37 157.5 93 79.6
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 6.4e-37 157.1 94 79.8
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 6.4e-37 157.1 94 78.7
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 6.4e-37 157.1 92 80.4
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 6.4e-37 157.1 92 80.4
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 8.4e-37 156.8 92 77.2
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 8.4e-37 156.8 92 79.3
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.1e-36 156.4 103 74.8
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.1e-36 156.4 92 79.3
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.9e-36 155.6 94 77.7
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 2.4e-36 155.2 92 77.2
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 3.2e-36 154.8 92 77.2
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 4.2e-36 154.5 94 77.7
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 9.3e-36 153.3 92 76.1
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 9.3e-36 153.3 92 76.1
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 9.3e-36 153.3 92 76.1
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 9.3e-36 153.3 92 76.1
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 9.3e-36 153.3 92 76.1
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 9.3e-36 153.3 105 70.5
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.6e-35 152.5 92 76.1
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 2.1e-35 152.1 94 76.6
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 2.7e-35 151.8 92 73.9
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 2.7e-35 151.8 92 75.0
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 6.0e-35 150.6 94 72.3
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 6.0e-35 150.6 92 73.9
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 6.0e-35 150.6 92 75.0
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 1.0e-34 149.8 94 76.6
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 1.8e-34 149.1 94 74.5
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 2.3e-34 148.7 93 71.0
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 3.0e-34 148.3 92 72.8
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 3.0e-34 148.3 92 72.8
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 6.7e-34 147.1 94 73.4
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 8.7e-34 146.7 92 77.2
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.9e-33 145.6 84 79.8
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 1.1e-31 139.8 94 68.1
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 3.1e-31 138.3 92 67.4
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 5.3e-31 137.5 92 67.4
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.3e-29 132.9 91 63.7
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 4.2e-28 127.9 93 62.4
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 7.1e-28 127.1 91 63.7
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 6.0e-27 124.0 71 80.3
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.3e-26 122.9 75 80.0
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.8e-26 122.5 65 86.2
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.8e-26 122.5 93 58.1
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 5.1e-26 120.9 65 89.2
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.5e-25 119.4 92 55.4
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.9e-25 119.0 92 52.2
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 5.6e-25 117.5 82 64.6
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 9.6e-25 116.7 77 63.6
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.3e-24 116.3 64 85.9
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 2.1e-24 115.5 69 75.4
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.8e-24 115.2 64 84.4
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 3.7e-24 114.8 64 84.4
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 3.1e-23 111.7 64 81.2
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 5.3e-23 110.9 66 77.3
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 9.0e-23 110.2 65 80.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.5e-22 109.4 65 76.9
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.5e-22 109.4 93 49.5
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 4.2e-20 101.3 64 78.1
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 6.0e-19 97.4 75 68.0
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 1.3e-16 89.7 94 54.3
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 6.5e-13 77.4 54 64.8
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 9.7e-09 63.5 40 72.5
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 8.2e-08 60.5 42 66.7


User provided reference genes

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