Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 1.1e-114 416.8 227 100.0
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 2.7e-73 279.3 228 64.5
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 4.6e-73 278.5 228 64.5
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 1.6e-70 270.0 229 62.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.1e-70 269.6 230 63.5
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 2.1e-70 269.6 246 61.0
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 4.8e-70 268.5 232 64.2
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 1.4e-69 266.9 228 63.2
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 2.4e-69 266.2 228 62.7
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 3.1e-69 265.8 230 63.0
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 5.3e-69 265.0 237 61.6
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 1.5e-68 263.5 228 63.2
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 2.6e-68 262.7 228 62.7
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 4.5e-68 261.9 231 63.6
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 5.8e-68 261.5 178 73.6
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 7.6e-68 261.2 225 62.7
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 1.0e-67 260.8 229 63.3
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 1.7e-67 260.0 226 65.0
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 1.7e-67 260.0 229 62.9
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 2.9e-67 259.2 229 62.9
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 3.8e-67 258.8 236 61.9
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 3.8e-67 258.8 229 62.9
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 1.1e-66 257.3 228 61.0
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 1.1e-66 257.3 237 68.4
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 1.1e-66 257.3 237 67.1
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 2.5e-66 256.1 231 68.0
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 2.5e-66 256.1 230 61.7
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 2.5e-66 256.1 232 63.8
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 2.5e-66 256.1 227 61.2
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 2.5e-66 256.1 236 61.4
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 2.5e-66 256.1 226 61.9
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 3.2e-66 255.8 230 62.2
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 5.5e-66 255.0 230 62.2
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 9.3e-66 254.2 236 59.3
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 9.3e-66 254.2 233 59.7
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 9.3e-66 254.2 233 59.7
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 1.2e-65 253.8 237 66.7
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 1.6e-65 253.4 228 61.4
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 2.7e-65 252.7 233 59.2
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 3.5e-65 252.3 233 59.7
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 6.1e-65 251.5 228 59.6
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 6.1e-65 251.5 225 60.0
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 7.9e-65 251.1 225 60.4
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 7.9e-65 251.1 228 61.0
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 1.0e-64 250.8 228 59.6
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 3.0e-64 249.2 228 59.6
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 3.0e-64 249.2 228 64.0
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 1.5e-63 246.9 225 59.6
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 1.9e-63 246.5 227 58.6
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 1.9e-63 246.5 199 67.8
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 4.3e-63 245.4 225 59.6
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 5.7e-63 245.0 232 59.1
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 7.4e-63 244.6 228 58.3
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 9.7e-63 244.2 231 64.1
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 3.7e-62 242.3 232 58.2
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 4.8e-62 241.9 234 56.8
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 2.4e-61 239.6 226 60.6
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 4.1e-61 238.8 174 73.0
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 4.5e-60 235.3 130 88.5
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 4.5e-60 235.3 132 85.6
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 5.9e-60 235.0 133 85.0
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 5.9e-60 235.0 136 83.8
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 1.9e-58 229.9 130 86.9
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 1.9e-58 229.9 130 86.9
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 5.5e-58 228.4 232 55.2
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 2.1e-57 226.5 132 81.1
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 2.1e-57 226.5 209 59.8
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 3.6e-57 225.7 130 82.3
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 4.6e-57 225.3 127 85.0
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 1.4e-56 223.8 127 84.3
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 3.0e-56 222.6 127 83.5
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 3.0e-56 222.6 127 83.5
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 1.5e-55 220.3 204 61.8
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 1.5e-55 220.3 140 77.9
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 1.5e-55 220.3 140 77.9
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 1.3e-54 217.2 128 82.0
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 3.1e-53 212.6 232 54.7
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 1.5e-52 210.3 179 61.5
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 3.8e-51 205.7 135 74.1
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 1.4e-50 203.8 135 71.9
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 1.9e-50 203.4 212 55.2
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 1.2e-49 200.7 212 56.1
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 2.7e-49 199.5 139 69.8
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 6.1e-49 198.4 116 82.8
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.4e-48 197.2 131 74.8
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 1.4e-48 197.2 127 75.6
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 4.4e-47 192.2 140 70.7
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 1.7e-46 190.3 228 49.6
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 1.1e-45 187.6 133 67.7
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 6.3e-38 161.8 180 53.9
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 3.5e-36 156.0 134 56.0
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 4.5e-36 155.6 127 66.9
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 6.5e-35 151.8 228 43.0
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 1.4e-29 134.0 175 46.9
Actinidia14379 Actinidia chinensis HOM05D007059 ORTHO05D009155 7.0e-21 105.1 58 86.2
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 5.9e-20 102.1 61 77.0
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 1.0e-19 101.3 58 79.3
BolC5t33201H Brassica oleracea HOM05D007059 ORTHO05D009155 2.3e-19 100.1 86 64.0
Cre01.g007050 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D009155 6.1e-17 92.0 115 45.2
SMO364G0884 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 2.2e-14 83.6 67 65.7
Cre03.g197850 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D034487 6.4e-14 82.0 139 31.7
BraA05t21808Z Brassica rapa HOM05D007059 ORTHO05D040342 2.1e-09 67.0 47 74.5
A05p29230 Brassica napus HOM05D007059 ORTHO05D040342 8.0e-09 65.1 42 71.4
MCO14G049 Micromonas commoda HOM05D007059 ORTHO05D009155 2.3e-08 63.5 99 35.4


User provided reference genes

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