Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 2.3e-201 705.3 341 100.0
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 3.8e-63 246.1 196 58.2
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 1.0e-60 238.0 198 58.1
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 3.0e-60 236.5 200 55.5
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 2.0e-59 233.8 191 57.1
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 1.7e-58 230.7 208 54.3
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 2.8e-58 229.9 232 49.1
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 2.8e-58 229.9 207 55.1
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 6.3e-58 228.8 206 52.9
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 8.2e-58 228.4 197 53.3
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.1e-57 228.0 198 55.6
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 1.8e-57 227.3 231 50.6
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 2.4e-57 226.9 232 48.3
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.4e-57 226.9 213 53.5
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 4.1e-57 226.1 194 55.2
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.0e-56 223.8 199 54.3
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 2.0e-56 223.8 198 53.0
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 2.0e-56 223.8 197 52.3
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 5.9e-56 222.2 164 62.8
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 5.9e-56 222.2 194 54.6
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 1.0e-55 221.5 196 54.1
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 1.5e-54 217.6 165 61.2
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 3.2e-54 216.5 191 52.9
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 4.2e-54 216.1 199 53.8
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 4.2e-54 216.1 192 53.1
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 4.2e-54 216.1 196 52.6
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 9.4e-54 214.9 196 53.6
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 2.7e-53 213.4 194 52.6
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 4.7e-53 212.6 199 52.3
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 8.0e-53 211.8 209 50.7
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 1.4e-52 211.1 163 58.9
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 2.3e-52 210.3 163 59.5
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 4.0e-52 209.5 209 48.3
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 5.2e-52 209.1 193 51.8
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 5.2e-52 209.1 198 51.0
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 6.8e-52 208.8 195 52.8
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 8.8e-52 208.4 193 51.3
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 8.8e-52 208.4 193 50.8
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 8.8e-52 208.4 209 49.8
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 8.8e-52 208.4 197 53.3
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 1.5e-51 207.6 198 51.0
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 1.5e-51 207.6 198 50.5
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 1.5e-51 207.6 196 53.1
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 2.0e-51 207.2 195 52.3
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 2.6e-51 206.8 194 51.0
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 3.4e-51 206.5 165 57.0
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 3.4e-51 206.5 199 48.7
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 4.4e-51 206.1 198 48.5
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 4.4e-51 206.1 202 52.0
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 4.4e-51 206.1 163 58.3
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 2.8e-50 203.4 194 51.0
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 3.7e-50 203.0 197 49.2
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 1.1e-49 201.4 195 48.7
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 1.6e-48 197.6 164 55.5
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.6e-48 197.6 216 49.1
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 1.7e-47 194.1 156 54.5
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 2.2e-47 193.7 163 54.0
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 4.2e-46 189.5 194 45.9
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 7.2e-46 188.7 206 47.1
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 1.6e-45 187.6 162 52.5
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 3.6e-45 186.4 162 53.1
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 3.6e-45 186.4 198 48.0
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 6.1e-45 185.7 198 48.0
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 1.0e-44 184.9 164 51.2
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 8.8e-44 181.8 198 47.0
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 2.6e-43 180.3 163 54.6
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 5.7e-43 179.1 215 44.2
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 8.3e-42 175.3 158 52.5
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 1.2e-40 171.4 222 41.9
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 6.6e-39 165.6 181 46.4
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 9.5e-38 161.8 158 46.8
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 2.3e-36 157.1 159 45.9
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 4.0e-36 156.4 157 48.4
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 4.0e-36 156.4 163 46.0
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 8.9e-36 155.2 167 44.3
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 2.0e-35 154.1 160 45.0
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 2.6e-35 153.7 162 46.3
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 4.4e-35 152.9 192 43.2
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 2.9e-34 150.2 162 45.1
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 1.4e-33 147.9 187 43.9
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 1.2e-32 144.8 187 43.3
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 2.7e-32 143.7 188 43.1
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 1.3e-31 141.4 140 50.0
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 6.6e-31 139.0 187 43.9
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 2.1e-29 134.0 180 41.7
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 8.0e-29 132.1 181 43.1
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 1.4e-28 131.3 184 41.3
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 2.3e-28 130.6 184 41.3
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 5.2e-28 129.4 184 41.3
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 6.8e-28 129.0 155 38.1
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 8.9e-28 128.6 184 40.8
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 8.9e-28 128.6 184 40.8
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 4.9e-26 122.9 168 41.1
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 9.2e-25 118.6 184 39.7
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 6.0e-16 89.4 157 32.5
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 3.9e-15 86.7 119 42.0
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 4.9e-10 69.7 149 30.9
Mapoly0072s0055 Marchantia polymorpha HOM05D002497 ORTHO05D002697 1.6e-08 64.7 179 29.1
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 3.5e-08 63.5 157 25.5
SHI16731 Sapria himalayana HOM05D002497 ORTHO05D002697 4.6e-08 63.2 205 26.8
Pp3c11_23680 Physcomitrium patens HOM05D002497 ORTHO05D002697 1.0e-07 62.0 148 25.7
Psat1g003240 Pisum sativum HOM05D002497 ORTHO05D002697 1.3e-07 61.6 153 28.8
Aa31LG6G8110 Aethionema arabicum HOM05D002497 ORTHO05D002697 3.0e-07 60.5 212 26.4
Potri.019G073000 Populus trichocarpa HOM05D002497 ORTHO05D002697 3.0e-07 60.5 186 26.9
Gohir.D05G254500 Gossypium hirsutum HOM05D002497 ORTHO05D002697 3.9e-07 60.1 158 26.6
Sabra19G0084400 Salix brachista HOM05D002497 ORTHO05D002697 3.9e-07 60.1 184 26.1
Gohir.A05G252600 Gossypium hirsutum HOM05D002497 ORTHO05D002697 5.1e-07 59.7 158 26.6
Gorai.009G266000 Gossypium raimondii HOM05D002497 ORTHO05D002697 5.1e-07 59.7 158 26.6
Hma1.2p1_0442F.1_g153910 Hydrangea macrophylla HOM05D002497 ORTHO05D002697 6.6e-07 59.3 175 27.4
SMO141G0017 Selaginella moellendorffii HOM05D002497 ORTHO05D002697 8.6e-07 58.9 163 26.4
SalBow7G1521 Salvia bowleyana HOM05D002497 ORTHO05D002697 1.1e-06 58.5 166 25.9
DCAR_003518 Daucus carota HOM05D002497 ORTHO05D002697 1.5e-06 58.2 181 26.0
Oeu023207.2 Olea europaea HOM05D002497 ORTHO05D002697 1.5e-06 58.2 161 27.3
Gohir.A02G087500 Gossypium hirsutum HOM05D002497 ORTHO05D002697 1.9e-06 57.8 158 25.3
Nn5g27417 Nelumbo nucifera HOM05D002497 ORTHO05D002697 1.9e-06 57.8 161 26.7
arahy.Tifrunner.gnm1.ann1.V34W8S Arachis hypogaea HOM05D002497 ORTHO05D002697 2.5e-06 57.4 163 27.6
Gohir.D02G102400 Gossypium hirsutum HOM05D002497 ORTHO05D002697 2.5e-06 57.4 158 25.3
Gorai.005G116200 Gossypium raimondii HOM05D002497 ORTHO05D002697 2.5e-06 57.4 158 25.3
Manes.02G208680 Manihot esculenta HOM05D002497 ORTHO05D002697 2.5e-06 57.4 193 25.9
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.5e-06 57.4 162 29.0
arahy.Tifrunner.gnm1.ann1.891MI4 Arachis hypogaea HOM05D002497 ORTHO05D002697 3.3e-06 57.0 163 27.6
MSTRG.23908 Avicennia marina HOM05D002497 ORTHO05D002697 3.3e-06 57.0 153 30.7
Eucgr.F02964 Eucalyptus grandis HOM05D002497 ORTHO05D002697 3.3e-06 57.0 174 27.6
unitig_46.g17990 Utricularia gibba HOM05D002497 ORTHO05D002697 3.3e-06 57.0 151 27.8
COL.COLO4_24594 Corchorus olitorius HOM05D002497 ORTHO05D002697 4.3e-06 56.6 163 27.6
Os01g0886000 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 4.3e-06 56.6 165 26.1
THA.LOC104806757 Tarenaya hassleriana HOM05D002497 ORTHO05D002697 4.3e-06 56.6 162 27.8
Migut.C01356 Erythranthe guttata HOM05D002497 ORTHO05D002697 5.6e-06 56.2 193 25.4
Lsat_1_v5_gn_1_25241 Lactuca sativa HOM05D002497 ORTHO05D002697 5.6e-06 56.2 157 28.7
Medtr3g005140 Medicago truncatula HOM05D002497 ORTHO05D002697 5.6e-06 56.2 163 27.0
Medtr7g011850 Medicago truncatula HOM05D002497 ORTHO05D002697 5.6e-06 56.2 150 30.0
RcHm_v2.0_Chr7g0231261 Rosa chinensis HOM05D002497 ORTHO05D002697 5.6e-06 56.2 215 27.4
Sed0011145 Sechium edule HOM05D002497 ORTHO05D002697 5.6e-06 56.2 159 27.0
Thecc.08G173800 Theobroma cacao HOM05D002497 ORTHO05D002697 5.6e-06 56.2 158 25.9
Aqoxy3G03548 Aquilegia oxysepala HOM05D002497 ORTHO05D002697 7.3e-06 55.8 154 29.2
CiPaw.04G010800 Carya illinoinensis HOM05D002497 ORTHO05D002697 7.3e-06 55.8 162 27.8
ECA247G3374 Erigeron canadensis HOM05D002497 ORTHO05D002697 7.3e-06 55.8 157 28.7
Glyma.04G256600 Glycine max HOM05D002497 ORTHO05D002697 7.3e-06 55.8 158 25.9
HanXRQChr04g0102671 Helianthus annuus HOM05D002497 ORTHO05D002697 7.3e-06 55.8 162 29.6
Potri.013G100000 Populus trichocarpa HOM05D002497 ORTHO05D002697 7.3e-06 55.8 183 27.3
QL02p039295 Quercus lobata HOM05D002497 ORTHO05D002697 7.3e-06 55.8 154 29.2
Glyma.06G324900 Glycine max HOM05D002497 ORTHO05D002697 9.6e-06 55.5 158 25.9
Lj3g0009450 Lotus japonicus HOM05D002497 ORTHO05D002697 9.6e-06 55.5 163 27.6
VMungo1080G0751 Vigna mungo HOM05D002497 ORTHO05D002697 9.6e-06 55.5 188 25.0


User provided reference genes

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