Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 0.0e+00 1478.0 748 100.0
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 1.3e-175 620.9 783 47.9
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 5.1e-169 599.0 784 46.4
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 8.7e-169 598.2 815 46.5
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 8.7e-169 598.2 799 44.8
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 3.3e-168 596.3 772 44.2
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 7.4e-168 595.1 795 44.3
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 4.8e-167 592.4 804 44.5
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 3.2e-163 579.7 784 44.9
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 7.9e-162 575.1 803 44.3
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 4.3e-160 569.3 784 44.6
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 5.6e-160 568.9 791 42.7
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 6.2e-159 565.5 771 42.7
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 3.1e-158 563.1 791 43.6
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 1.0e-156 558.1 811 42.5
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.0e-156 558.1 788 42.8
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 2.9e-156 556.6 795 42.8
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 6.5e-156 555.4 782 43.9
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 1.1e-155 554.7 799 42.2
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 9.3e-155 551.6 794 42.2
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 4.6e-154 549.3 780 41.7
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 1.3e-153 547.7 787 42.8
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 1.3e-153 547.7 801 43.1
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 5.1e-153 545.8 761 44.2
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 8.7e-153 545.0 772 43.0
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 1.1e-152 544.7 786 42.5
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 2.5e-152 543.5 784 43.8
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 7.4e-152 542.0 786 41.9
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 9.6e-152 541.6 788 42.1
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 8.2e-151 538.5 782 41.7
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 1.1e-150 538.1 788 42.0
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 6.9e-150 535.4 786 41.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 6.9e-150 535.4 784 42.7
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 1.5e-149 534.3 795 42.0
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 5.9e-149 532.3 779 39.7
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 2.5e-147 526.9 794 41.6
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 2.5e-147 526.9 797 41.5
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 2.7e-146 523.5 764 42.4
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 2.7e-146 523.5 723 43.4
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 6.1e-146 522.3 793 41.7
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 1.0e-145 521.5 812 41.5
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 1.1e-144 518.1 705 45.2
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 5.7e-144 515.8 762 42.1
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 9.7e-144 515.0 789 40.8
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 2.2e-143 513.8 750 41.9
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 1.4e-142 511.1 750 40.5
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 1.4e-142 511.1 867 38.8
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 2.4e-142 510.4 805 41.0
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 5.3e-142 509.2 779 40.8
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 5.3e-142 509.2 776 41.4
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 1.2e-141 508.1 769 40.3
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 2.0e-141 507.3 873 40.1
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 7.7e-141 505.4 770 39.6
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 1.0e-140 505.0 773 40.2
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 1.0e-140 505.0 801 40.1
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 3.8e-140 503.1 764 39.7
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 1.8e-137 494.2 755 40.5
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 1.3e-135 488.0 767 39.0
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 6.3e-135 485.7 757 42.4
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 1.4e-134 484.6 769 38.9
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 1.4e-134 484.6 767 40.4
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 4.1e-134 483.0 675 43.4
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 6.9e-134 482.3 682 41.2
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 1.5e-133 481.1 826 38.1
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 2.0e-133 480.7 804 40.0
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 7.7e-133 478.8 766 38.8
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 1.9e-131 474.2 774 40.1
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 5.5e-131 472.6 778 38.9
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 1.2e-130 471.5 775 39.2
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 6.1e-130 469.2 754 39.3
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 3.0e-129 466.8 702 41.3
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 1.4e-126 458.0 847 37.2
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 3.5e-125 453.4 696 42.1
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 6.5e-124 449.1 764 39.3
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 1.5e-123 448.0 686 42.1
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 6.1e-122 442.6 225 97.8
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 8.8e-121 438.7 672 42.4
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.7e-119 434.5 577 46.6
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 2.2e-119 434.1 635 40.3
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 4.8e-119 433.0 567 47.1
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 1.9e-115 421.0 632 39.4
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 1.2e-114 418.3 793 35.8
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 9.1e-110 402.1 833 34.8
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 1.2e-106 391.7 754 37.5
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 1.5e-99 368.2 597 38.0
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 3.3e-99 367.1 908 31.6
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 4.1e-94 350.1 895 29.8
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.3e-92 345.1 516 42.6
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 6.6e-92 342.8 497 41.6
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 8.0e-90 335.9 452 46.0
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.5e-88 331.6 298 58.7
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 3.4e-80 303.9 754 33.6
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 1.1e-78 298.9 416 43.5
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 9.2e-78 295.8 993 28.3
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.1e-74 284.6 336 51.5
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 7.6e-72 276.2 499 36.9
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 2.9e-71 274.2 245 55.9
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 1.1e-65 255.8 528 33.5
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 7.6e-56 223.0 260 46.9
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 2.1e-53 214.9 252 45.6
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 3.9e-52 210.7 438 34.9
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 5.1e-52 210.3 830 26.1
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.5e-51 208.8 672 30.5
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 4.0e-49 200.7 218 49.5
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.1e-46 192.6 186 52.2
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.8e-41 175.3 715 27.0
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 1.9e-38 165.2 242 39.3
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 1.3e-34 152.5 955 23.7
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.5e-32 145.6 229 40.6
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 5.9e-32 143.7 223 37.2
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 5.5e-30 137.1 260 34.2
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 3.0e-28 131.3 193 36.8
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.1e-27 129.4 154 42.9
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 4.8e-26 124.0 118 55.1
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 4.5e-24 117.5 105 56.2
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 1.0e-23 116.3 90 63.3
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.6e-21 109.0 95 55.8
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.2e-16 92.8 99 44.4
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 3.4e-16 91.3 125 40.0
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 5.9e-16 90.5 106 45.3
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 6.1e-13 80.5 196 29.6
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.5e-11 75.9 98 42.9
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 5.3e-09 67.4 166 31.3
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.7e-07 62.4 73 43.8
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.2e-07 62.0 50 58.0
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 2.9e-07 61.6 205 25.9
Zm00001eb229180 Zea mays HOM05D000847 ORTHO05D003278 5.0e-07 60.8 193 25.4
HanXRQChr01g0011491 Helianthus annuus HOM05D000847 ORTHO05D003278 1.5e-06 59.3 203 26.6
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 1.9e-06 58.9 86 37.2
Mapoly0127s0051 Marchantia polymorpha HOM05D000847 ORTHO05D003278 2.5e-06 58.5 194 25.3
Lsat_1_v5_gn_2_114681 Lactuca sativa HOM05D000847 ORTHO05D003278 5.5e-06 57.4 193 25.9
Zm00001eb210140 Zea mays HOM05D000847 ORTHO05D003278 7.2e-06 57.0 193 24.4


User provided reference genes

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