Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 9.7e-52 206.5 99 100.0
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 5.6e-31 137.5 75 90.7
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.3e-27 126.3 95 65.3
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 2.9e-27 125.2 76 80.3
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 8.3e-27 123.6 75 78.7
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.1e-26 123.2 95 64.2
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.4e-26 122.9 95 64.2
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.4e-26 122.9 95 64.2
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 2.4e-26 122.1 75 76.0
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 4.1e-26 121.3 110 59.1
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 4.1e-26 121.3 75 76.0
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 7.0e-26 120.6 90 67.8
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 7.0e-26 120.6 75 74.7
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.2e-25 119.8 74 77.0
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.6e-25 119.4 75 76.0
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 2.7e-25 118.6 75 76.0
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 3.5e-25 118.2 75 74.7
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 4.6e-25 117.9 75 76.0
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 4.6e-25 117.9 75 74.7
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 4.6e-25 117.9 75 74.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 4.6e-25 117.9 75 74.7
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 4.6e-25 117.9 90 68.9
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 4.6e-25 117.9 75 74.7
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 4.6e-25 117.9 79 72.2
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 5.9e-25 117.5 75 72.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 5.9e-25 117.5 75 74.7
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 7.8e-25 117.1 75 73.3
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 7.8e-25 117.1 75 73.3
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 7.8e-25 117.1 75 73.3
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 7.8e-25 117.1 90 65.6
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 1.0e-24 116.7 95 61.1
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.0e-24 116.7 75 72.0
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.3e-24 116.3 75 72.0
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.3e-24 116.3 97 62.9
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 1.3e-24 116.3 90 65.6
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.3e-24 116.3 75 73.3
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 1.7e-24 115.9 75 74.7
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 2.3e-24 115.5 75 70.7
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 3.9e-24 114.8 90 64.4
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 5.0e-24 114.4 79 68.4
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 5.0e-24 114.4 75 70.7
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 5.0e-24 114.4 75 70.7
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 6.6e-24 114.0 75 70.7
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 8.6e-24 113.6 79 69.6
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 8.6e-24 113.6 79 69.6
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 8.6e-24 113.6 79 69.6
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.1e-23 113.2 75 70.7
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.1e-23 113.2 75 68.0
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.1e-23 113.2 76 75.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.1e-23 113.2 97 61.9
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 1.5e-23 112.8 90 63.3
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.5e-23 112.8 75 73.3
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 1.5e-23 112.8 97 60.8
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.9e-23 112.5 96 64.6
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 1.9e-23 112.5 75 70.7
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 1.9e-23 112.5 75 70.7
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.9e-23 112.5 97 62.9
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.9e-23 112.5 79 67.1
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.5e-23 112.1 75 69.3
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.5e-23 112.1 97 62.9
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.5e-23 112.1 77 72.7
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 3.3e-23 111.7 79 69.6
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 4.3e-23 111.3 75 69.3
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 4.3e-23 111.3 75 68.0
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 5.6e-23 110.9 96 60.4
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 7.3e-23 110.5 75 72.0
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 7.3e-23 110.5 75 73.3
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.2e-22 109.8 75 70.7
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.2e-22 109.8 95 61.1
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.6e-22 109.4 75 69.3
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.6e-22 109.4 95 61.1
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.6e-22 109.4 77 71.4
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 2.1e-22 109.0 75 68.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 2.1e-22 109.0 95 57.9
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 3.6e-22 108.2 95 58.9
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 3.6e-22 108.2 76 72.4
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 3.6e-22 108.2 77 70.1
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 4.7e-22 107.8 79 65.8
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 4.7e-22 107.8 75 70.7
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 4.7e-22 107.8 90 65.6
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 4.7e-22 107.8 95 61.1
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 4.7e-22 107.8 75 66.7
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 8.0e-22 107.1 79 65.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 1.1e-21 106.7 75 65.3
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.1e-21 106.7 95 58.9
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.1e-21 106.7 95 58.9
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 1.4e-21 106.3 77 72.7
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 1.4e-21 106.3 75 70.7
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.8e-21 105.9 75 69.3
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 2.3e-21 105.5 75 70.7
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 2.3e-21 105.5 75 69.3
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.3e-21 105.5 90 64.4
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.1e-21 105.1 95 58.9
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 4.0e-21 104.8 77 67.5
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 6.8e-21 104.0 95 60.0
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 8.9e-21 103.6 95 58.9
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 1.2e-20 103.2 79 67.1
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.0e-20 102.4 75 69.3
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 2.6e-20 102.1 75 68.0
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 2.6e-20 102.1 96 60.4
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 9.8e-20 100.1 75 65.3
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.7e-19 99.4 75 62.7
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.2e-19 99.0 77 67.5
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.2e-19 99.0 77 67.5
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.2e-19 99.0 75 64.0
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 2.2e-19 99.0 79 65.8
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 8.3e-19 97.1 79 62.0
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 2.4e-18 95.5 80 61.2
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.4e-18 95.5 75 61.3
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 5.4e-18 94.4 79 60.8
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.0e-18 94.0 75 58.7
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.0e-18 94.0 79 60.8
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 9.2e-18 93.6 75 57.3
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 2.0e-17 92.4 79 58.2
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.1e-13 80.1 97 46.4
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 2.3e-13 79.0 75 50.7
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 4.4e-12 74.7 76 51.3
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 1.4e-10 69.7 37 86.5
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 7.1e-10 67.4 38 78.9
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 4.3e-07 58.2 42 69.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 2.1e-06 55.8 64 46.9


User provided reference genes

Program Settings