Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 5.6e-104 380.9 193 100.0
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 5.5e-75 284.6 186 75.3
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 5.1e-73 278.1 206 68.4
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 2.0e-72 276.2 180 76.1
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.8e-71 272.3 187 74.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 2.8e-71 272.3 182 77.5
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 3.7e-71 271.9 179 75.4
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.7e-71 271.9 178 77.0
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 4.8e-71 271.6 193 70.5
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.8e-70 269.6 178 74.7
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 3.1e-70 268.9 181 74.6
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 6.9e-70 267.7 180 72.8
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.6e-69 265.8 180 73.9
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 4.5e-69 265.0 182 74.7
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 5.9e-69 264.6 174 74.7
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 7.7e-69 264.2 177 72.9
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 2.2e-68 262.7 195 71.3
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 2.2e-68 262.7 180 72.2
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 2.9e-68 262.3 193 72.0
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 6.5e-68 261.2 179 72.1
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 8.5e-68 260.8 178 71.9
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.1e-67 260.4 181 72.4
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.1e-67 260.4 183 69.9
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.1e-67 260.4 180 73.3
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.2e-67 258.5 179 72.6
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 7.2e-67 257.7 174 75.3
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.2e-66 256.9 174 74.1
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.6e-66 256.5 178 72.5
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 4.7e-66 255.0 186 68.8
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 6.1e-66 254.6 174 74.1
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 6.1e-66 254.6 175 70.9
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 7.9e-66 254.2 178 66.9
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.0e-65 253.8 178 71.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.0e-65 253.8 174 74.1
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.0e-65 253.8 168 75.6
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.0e-65 253.8 180 71.7
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.3e-65 252.7 179 69.3
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 3.0e-65 252.3 179 72.1
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.1e-65 251.5 174 71.8
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 6.7e-65 251.1 178 70.2
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 8.8e-65 250.8 180 67.8
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.5e-64 250.0 169 74.6
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 4.4e-64 248.4 179 68.2
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.4e-64 248.4 179 70.9
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.4e-64 247.7 179 70.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 7.4e-64 247.7 179 70.9
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 7.4e-64 247.7 176 71.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.3e-63 246.9 175 69.7
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.3e-63 246.9 174 71.3
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.2e-63 246.1 174 71.3
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.8e-63 245.7 174 72.4
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 3.7e-63 245.4 173 74.6
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 3.7e-63 245.4 174 73.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.8e-63 245.0 177 70.1
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 4.8e-63 245.0 178 70.8
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.3e-63 244.6 177 69.5
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 8.2e-63 244.2 177 71.2
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.1e-62 243.8 211 61.6
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.4e-62 243.4 179 67.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 3.1e-62 242.3 169 72.8
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 5.3e-62 241.5 172 70.3
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.2e-61 240.4 177 68.4
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.5e-61 240.0 178 69.1
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 2.0e-61 239.6 177 67.2
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 2.0e-61 239.6 181 65.7
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 3.5e-61 238.8 175 66.9
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 3.5e-61 238.8 175 66.9
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 4.5e-61 238.4 165 71.5
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.5e-61 238.4 181 69.6
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.0e-60 237.3 179 65.9
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-60 236.9 177 66.1
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-60 236.9 177 66.1
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-60 236.9 177 66.1
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.3e-60 236.9 262 52.7
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.3e-60 236.9 169 72.2
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.7e-60 236.5 165 71.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 1.7e-60 236.5 173 69.9
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.2e-60 236.1 180 66.7
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 2.2e-60 236.1 162 72.8
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.2e-60 236.1 171 67.8
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.2e-60 236.1 171 67.8
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.2e-60 236.1 190 65.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 2.9e-60 235.7 174 67.2
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.9e-60 235.7 190 63.7
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 6.5e-60 234.6 171 67.3
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 8.5e-60 234.2 171 67.3
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 8.5e-60 234.2 171 67.3
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 8.5e-60 234.2 190 64.7
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-59 233.8 174 66.1
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 1.5e-59 233.4 159 74.8
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.9e-59 233.0 201 63.2
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.9e-59 233.0 180 66.1
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.5e-59 232.6 178 65.2
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 3.2e-59 232.3 179 65.4
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 4.2e-59 231.9 176 67.0
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 5.5e-59 231.5 174 68.4
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 5.5e-59 231.5 171 69.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 5.5e-59 231.5 180 65.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 7.2e-59 231.1 159 73.6
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 9.4e-59 230.7 179 64.8
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.6e-58 229.9 166 64.5
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.1e-58 229.6 171 69.6
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.1e-58 229.6 193 62.7
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.7e-58 229.2 188 64.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.6e-58 228.8 171 69.0
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 4.7e-58 228.4 176 67.6
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 6.1e-58 228.0 160 70.6
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.0e-57 227.3 185 64.3
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.0e-57 227.3 173 66.5
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.0e-57 227.3 201 63.7
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.4e-57 226.9 181 63.0
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.8e-57 226.5 178 66.3
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.8e-57 226.5 175 68.6
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 3.9e-57 225.3 170 66.5
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 5.2e-57 224.9 181 67.4
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 5.2e-57 224.9 161 68.9
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.4e-56 221.9 169 68.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.7e-55 219.9 174 68.4
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 4.8e-55 218.4 203 56.7
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 6.3e-55 218.0 153 71.2
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 6.3e-55 218.0 153 71.2
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 8.2e-55 217.6 153 70.6
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 9.1e-54 214.2 201 58.7
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.2e-53 213.8 166 60.8
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 2.0e-53 213.0 155 67.7
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.7e-52 209.9 199 56.8
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 8.5e-52 207.6 166 57.8
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-51 206.8 155 66.5
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 9.4e-51 204.1 177 61.6
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.0e-49 200.7 123 79.7
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 3.0e-49 199.1 124 79.8
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.6e-48 196.1 126 75.4
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 8.3e-47 191.0 156 62.8
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 4.1e-46 188.7 126 74.6
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 5.3e-46 188.3 126 74.6
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 5.3e-46 188.3 122 73.0
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 9.1e-46 187.6 126 70.6
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 4.5e-45 185.3 120 76.7
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 6.5e-44 181.4 119 74.8
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.5e-43 180.3 160 55.6
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.9e-43 179.9 132 72.0
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.2e-42 177.2 130 66.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 8.0e-42 174.5 129 67.4
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 8.0e-42 174.5 130 67.7
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.2e-40 170.6 136 64.7
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 7.5e-40 167.9 148 57.4
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.8e-38 163.3 173 50.3
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.4e-38 162.9 151 54.3
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 7.0e-38 161.4 156 50.6
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 7.0e-38 161.4 162 51.2
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.9e-37 158.3 120 65.8
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.7e-37 157.9 140 56.4
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.3e-36 156.4 172 50.0
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.4e-30 136.3 108 65.7
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 3.5e-29 132.5 88 73.9
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.0e-24 116.7 109 57.8
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 7.5e-24 114.8 143 47.6
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 9.2e-22 107.8 90 65.6
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.1e-12 75.5 89 43.8
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 3.6e-10 69.3 50 62.0
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 8.1e-10 68.2 47 70.2
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 2.3e-09 66.6 46 71.7
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 2.3e-09 66.6 46 71.7
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 2.6e-08 63.2 46 65.2
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 7.6e-08 61.6 44 65.9


User provided reference genes

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