Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 3.9e-240 834.3 410 100.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 7.5e-231 803.5 408 96.8
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.4e-197 693.0 351 95.4
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 4.2e-181 638.3 412 77.9
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 4.6e-180 634.8 408 77.9
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.7e-179 632.9 403 78.9
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 8.1e-177 624.0 402 76.4
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.6e-175 619.0 402 75.9
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 7.6e-175 617.5 402 75.9
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.4e-173 613.2 402 75.9
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.9e-173 612.8 409 75.6
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 5.4e-173 611.3 401 74.1
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.5e-172 608.6 432 72.5
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.0e-171 607.1 351 82.6
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.7e-171 606.3 403 74.7
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 3.0e-171 605.5 353 81.0
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 3.9e-171 605.1 407 74.0
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.5e-170 602.4 401 73.6
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 4.3e-170 601.7 401 73.3
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 4.3e-170 601.7 393 75.1
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 7.3e-170 600.9 410 72.4
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 2.8e-169 599.0 399 74.7
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 3.6e-169 598.6 400 73.8
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 3.6e-169 598.6 423 72.1
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 3.6e-169 598.6 399 73.2
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 6.2e-169 597.8 403 75.9
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 6.2e-169 597.8 412 72.1
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 8.1e-169 597.4 383 76.5
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 6.9e-168 594.3 402 73.9
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 6.9e-168 594.3 399 72.7
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 9.0e-168 594.0 398 71.9
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 1.5e-167 593.2 403 72.5
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.6e-167 592.4 442 68.6
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 4.5e-167 591.7 411 71.3
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.7e-166 589.7 412 71.4
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.7e-166 589.7 401 72.8
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 2.2e-166 589.3 401 72.8
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 4.9e-166 588.2 374 79.4
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.9e-166 588.2 401 72.3
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 6.4e-166 587.8 431 67.7
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 2.7e-164 582.4 360 76.7
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 2.7e-164 582.4 406 70.7
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 3.5e-164 582.0 360 76.7
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 4.6e-164 581.6 411 71.5
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 7.9e-164 580.9 403 73.2
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.0e-163 580.5 388 71.1
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.8e-163 579.7 397 71.5
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.8e-163 579.7 397 71.5
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.8e-163 579.7 408 70.3
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.8e-163 579.7 404 72.0
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 3.0e-163 578.9 403 71.2
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 8.7e-163 577.4 409 70.4
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.1e-162 577.0 402 71.4
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.5e-162 576.6 358 77.7
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.9e-162 576.2 402 71.4
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.3e-162 575.5 407 69.3
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.3e-162 575.1 428 68.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 5.6e-162 574.7 420 68.8
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.6e-161 573.2 362 75.7
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.6e-161 573.2 402 70.9
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.1e-161 572.8 355 76.1
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 2.8e-161 572.4 407 68.8
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 8.1e-161 570.9 406 69.7
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.8e-160 569.7 333 80.2
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 3.1e-160 568.9 389 71.7
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 5.3e-160 568.2 410 71.2
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 9.0e-160 567.4 405 69.9
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.5e-159 566.6 412 68.4
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 5.8e-159 564.7 412 70.4
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.7e-158 563.1 368 72.8
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 3.8e-158 562.0 410 67.1
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 6.5e-158 561.2 403 69.0
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 6.5e-158 561.2 355 73.8
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-157 560.5 406 68.5
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 412 68.0
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 389 71.5
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.9e-157 559.7 415 67.5
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 2.5e-157 559.3 413 66.6
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-157 559.3 411 68.1
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 5.5e-157 558.1 408 67.6
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 5.5e-157 558.1 405 70.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 7.1e-157 557.8 417 67.1
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.2e-156 557.0 336 77.1
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-156 556.2 342 76.9
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 2.1e-156 556.2 413 67.1
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 4.6e-156 555.1 414 66.9
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 7.9e-156 554.3 375 72.3
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.3e-155 553.5 410 67.6
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.3e-155 552.7 346 76.0
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.3e-155 552.7 413 67.3
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 6.7e-155 551.2 368 73.9
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.9e-154 549.7 410 66.6
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.9e-154 549.7 404 69.8
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 3.3e-154 548.9 411 66.7
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-153 546.6 354 72.3
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.1e-153 546.2 415 66.5
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.4e-152 542.7 396 67.2
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 3.1e-152 542.3 344 73.3
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 5.3e-152 541.6 330 76.4
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.2e-151 540.4 371 72.8
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.5e-151 540.0 371 69.5
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.5e-151 538.5 393 68.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 2.1e-148 529.6 393 66.9
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.1e-148 529.6 411 66.7
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.1e-148 529.6 411 66.7
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 3.5e-148 528.9 298 82.9
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 7.9e-148 527.7 408 65.0
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.8e-147 526.6 411 66.4
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 8.7e-147 524.2 352 71.6
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 4.1e-144 515.4 414 63.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 9.0e-144 514.2 337 71.8
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-143 512.7 411 64.2
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.0e-142 510.8 418 62.9
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 6.5e-142 508.1 374 67.4
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 7.2e-141 504.6 374 67.4
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 6.1e-140 501.5 285 79.6
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 8.8e-139 497.7 337 67.1
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 7.4e-138 494.6 297 75.1
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.4e-136 490.3 397 61.5
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 6.9e-136 488.0 413 61.5
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-135 485.7 427 60.0
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.0e-134 484.2 334 67.4
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.8e-131 473.4 340 68.8
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 3.9e-131 472.2 334 65.6
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 8.8e-131 471.1 279 77.8
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 4.8e-129 465.3 432 60.4
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.1e-124 449.9 340 64.4
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 5.2e-115 418.7 362 59.1
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.2e-113 413.3 339 56.3
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 2.5e-109 399.8 261 73.6
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.6e-106 389.8 317 58.7
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 7.5e-106 388.3 321 57.6
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 7.7e-103 378.3 335 60.0
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 4.1e-96 355.9 272 64.7
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.7e-89 332.8 188 83.0
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.1e-88 329.3 257 68.5
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.8e-84 316.6 235 69.8
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 9.8e-82 308.1 303 55.8
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.7e-71 273.5 157 78.3
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.6e-69 265.8 275 50.5
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.1e-68 263.8 394 40.4
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 9.6e-61 238.4 143 70.6
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.6e-58 230.3 312 44.2
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-57 226.1 236 53.4
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.3e-53 213.0 224 54.0
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 6.0e-47 192.6 116 77.6
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-46 191.0 288 42.4
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-43 181.0 138 68.8
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-41 174.1 132 62.9
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-41 172.9 122 69.7
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-40 171.0 138 67.4
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-40 171.0 138 67.4
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-30 136.7 159 48.4
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-30 136.7 159 48.4
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 9.7e-29 132.1 226 37.2
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 1.7e-20 104.8 169 37.9
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 6.5e-17 92.8 53 71.7
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 6.5e-17 92.8 53 71.7
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-14 85.1 51 78.4
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 5.2e-06 56.6 47 55.3


User provided reference genes

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