Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.1e-239 832.8 410 100.0
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-230 802.7 408 96.8
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 4.6e-196 688.0 353 94.6
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.3e-179 632.5 410 78.3
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 3.0e-179 632.1 408 78.4
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 9.6e-178 627.1 401 79.3
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.3e-174 616.7 400 76.5
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 8.4e-174 614.0 400 75.8
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 8.4e-174 614.0 400 76.0
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 9.3e-173 610.5 400 74.8
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 2.7e-172 609.0 409 75.8
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.7e-171 606.3 400 76.0
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 8.7e-171 604.0 351 81.8
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.9e-170 602.8 392 75.8
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 4.3e-170 601.7 410 73.9
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 5.6e-170 601.3 401 74.1
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 9.6e-170 600.5 351 82.1
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.6e-169 599.7 408 73.0
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 2.8e-169 599.0 399 73.9
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.6e-169 598.6 430 72.1
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 6.2e-169 597.8 400 74.2
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 8.1e-169 597.4 400 73.2
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.1e-168 597.0 400 75.0
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.1e-168 597.0 402 73.6
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.8e-168 596.3 383 77.0
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 2.4e-168 595.9 399 74.7
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 9.0e-168 594.0 405 72.8
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 9.0e-168 594.0 401 76.3
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 9.0e-168 594.0 399 73.4
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.5e-167 593.2 425 72.2
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 9.9e-167 590.5 398 72.1
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.2e-166 589.3 440 68.9
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.9e-166 589.0 412 71.4
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 8.4e-166 587.4 399 73.7
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.1e-165 587.0 399 73.7
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.9e-165 586.3 399 73.2
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 3.2e-165 585.5 428 68.5
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 4.2e-165 585.1 411 70.8
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 5.4e-165 584.7 374 79.1
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.3e-165 583.9 401 72.1
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.2e-164 583.6 358 77.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 1.6e-164 583.2 358 77.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.6e-164 583.2 401 73.6
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.1e-164 582.8 410 71.5
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.8e-163 579.7 407 71.0
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 6.7e-163 577.8 404 70.8
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 6.7e-163 577.8 403 72.2
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 8.7e-163 577.4 403 72.2
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 8.7e-163 577.4 401 71.6
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.1e-162 577.0 400 72.2
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 4.3e-162 575.1 401 70.3
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 4.3e-162 575.1 401 70.3
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 4.3e-162 575.1 410 71.2
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 7.4e-162 574.3 403 71.2
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.3e-161 573.5 353 76.8
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 2.1e-161 572.8 347 77.8
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.1e-161 572.8 426 69.0
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 3.7e-161 572.0 407 71.5
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 6.2e-161 571.2 362 76.0
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 6.2e-161 571.2 400 71.2
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 8.1e-161 570.9 405 69.6
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 8.1e-161 570.9 411 71.8
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.1e-160 570.5 404 70.3
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.8e-160 569.7 334 80.2
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.8e-160 569.7 408 70.8
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 4.0e-160 568.5 404 70.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.0e-159 566.2 416 68.3
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.4e-159 565.5 401 70.1
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 7.6e-159 564.3 385 72.5
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.7e-158 563.1 408 67.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.2e-158 562.8 412 68.2
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 2.9e-158 562.4 388 71.6
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.8e-158 562.0 414 67.6
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 3.8e-158 562.0 412 68.2
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 6.5e-158 561.2 402 70.1
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.4e-157 560.1 411 67.4
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.4e-157 560.1 368 73.1
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.9e-157 559.7 357 73.9
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-157 559.3 348 77.0
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 4.2e-157 558.5 404 69.1
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 7.1e-157 557.8 410 67.8
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 9.3e-157 557.4 409 68.0
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-156 555.8 340 77.6
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 4.6e-156 555.1 410 67.6
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.3e-155 553.5 403 71.0
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.8e-155 553.1 383 70.8
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.0e-155 552.4 411 67.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 3.9e-155 552.0 414 67.9
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 5.1e-155 551.6 410 67.3
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 5.1e-155 551.6 408 66.7
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 8.7e-155 550.8 344 76.7
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.5e-154 550.1 404 70.3
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.9e-154 549.7 356 73.0
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.5e-154 549.3 380 70.8
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 3.3e-154 548.9 412 66.5
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 3.3e-154 548.9 366 74.3
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.4e-152 542.7 358 72.1
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 5.3e-152 541.6 393 69.2
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 6.9e-152 541.2 396 67.4
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 2.0e-151 539.7 330 76.7
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.1e-149 533.9 371 72.8
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 5.5e-149 531.6 371 68.7
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 2.7e-148 529.3 296 83.8
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.5e-148 528.9 408 65.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 4.6e-148 528.5 394 67.3
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 7.9e-148 527.7 411 67.2
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 7.9e-148 527.7 411 67.2
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 6.7e-147 524.6 411 66.9
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 2.8e-145 519.2 352 71.0
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 4.1e-144 515.4 412 64.1
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.2e-143 513.8 337 72.1
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 5.0e-142 508.4 409 64.8
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.1e-141 507.3 360 69.4
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.4e-141 506.9 374 67.6
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 1.6e-140 503.4 374 67.6
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.7e-140 502.7 283 80.9
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-138 496.9 297 76.4
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.7e-137 493.4 337 66.5
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.8e-136 490.0 400 61.8
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-135 487.3 414 60.9
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-135 486.9 411 61.8
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 2.5e-133 479.6 334 66.8
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 6.7e-131 471.5 277 78.7
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 8.8e-131 471.1 341 70.1
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 5.7e-130 468.4 334 65.3
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 8.2e-129 464.5 432 60.6
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-124 450.7 340 65.0
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.2e-114 417.5 362 59.4
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.2e-113 413.3 339 56.6
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 2.9e-110 402.9 261 74.3
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.8e-107 393.7 321 57.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.2e-105 386.7 317 58.7
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.7e-103 379.8 335 60.9
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 5.4e-96 355.5 331 58.0
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.9e-88 330.5 188 83.5
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 6.0e-87 325.5 257 68.1
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 4.0e-83 312.8 235 69.4
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-81 307.4 303 56.1
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 8.4e-73 278.5 157 80.9
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.6e-69 265.8 392 41.1
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.6e-69 265.8 275 51.3
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 3.9e-62 243.0 143 73.4
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 4.0e-59 233.0 312 45.2
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 5.4e-56 222.6 236 53.0
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-52 211.1 224 54.0
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 3.5e-47 193.4 116 78.4
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 6.0e-47 192.6 339 38.9
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-42 177.9 138 68.1
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 5.8e-42 176.0 130 64.6
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-41 173.3 122 70.5
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-40 169.5 138 66.7
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-40 169.5 138 66.7
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-30 137.9 159 49.1
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-30 137.9 159 49.1
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 2.2e-28 131.0 226 37.2
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 1.7e-20 104.8 169 38.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 8.5e-17 92.4 53 71.7
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 8.5e-17 92.4 53 71.7
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-14 85.1 51 78.4
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 6.7e-06 56.2 47 55.3


User provided reference genes

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