Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 2310.4 1168 100.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1930.2 1169 83.4
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1902.5 1172 82.8
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1901.7 1171 81.8
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1895.2 1172 82.8
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1886.3 1171 81.4
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1885.9 1155 82.0
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1884.8 1171 81.4
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1880.9 1169 81.7
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1874.0 1170 81.4
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1871.7 1172 81.3
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1870.9 1172 81.1
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1870.1 1171 80.8
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1868.6 1170 80.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1866.3 1200 79.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1865.9 1172 81.2
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1865.9 1168 81.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1864.0 1170 80.7
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1859.0 1172 81.5
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1857.0 1172 80.5
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1854.0 1171 80.1
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1849.7 1181 80.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1849.3 1172 80.2
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1848.6 1182 79.8
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1848.2 1169 81.0
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1847.8 1172 80.5
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1843.6 1171 80.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1843.2 1171 80.0
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1840.9 1172 80.0
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1840.9 1171 80.1
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1838.2 1172 79.9
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1835.8 1215 78.0
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1834.7 1167 80.8
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1833.5 1169 80.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1832.0 1219 77.5
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1828.9 1219 77.5
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1828.5 1172 79.3
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1824.7 1208 78.7
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1823.9 1187 79.3
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1822.4 1219 77.4
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1815.4 1212 78.2
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1814.7 1210 78.1
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1813.1 1174 79.5
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1810.8 1169 80.0
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1810.0 1174 78.9
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1808.9 1172 78.2
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1171 79.0
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1228 75.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1805.4 1174 78.8
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1804.3 1168 79.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1803.5 1169 78.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1802.7 1174 78.3
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1798.9 1226 75.2
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1798.5 1208 76.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1798.5 1170 80.0
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1796.9 1208 76.7
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1794.2 1195 77.2
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1791.9 1173 77.5
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1791.2 1172 78.1
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1790.8 1196 77.0
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1788.9 1171 78.6
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1788.1 1171 78.7
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1171 78.5
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1783.1 1170 77.8
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1780.8 1170 77.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1771.9 1172 77.0
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1770.4 1171 77.4
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1769.6 1177 76.8
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1766.9 1173 77.4
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1763.8 1174 76.9
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1759.6 1172 77.2
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1175 77.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1749.2 1175 76.3
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1748.8 1169 76.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1171 76.4
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1744.9 1175 75.8
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1741.1 1171 76.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1173 76.6
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1738.0 1231 73.2
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1730.3 1201 75.5
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1728.4 1170 75.6
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1176 74.9
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1179 75.6
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1719.1 1205 74.4
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1172 76.1
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1712.6 1232 72.9
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1710.3 1173 74.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1709.9 1176 74.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1708.7 1170 74.9
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1707.2 1173 74.7
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1231 73.1
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1706.0 1173 76.1
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1703.0 1172 74.4
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1698.7 1172 74.3
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1697.9 1175 74.6
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1696.8 1174 74.0
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1696.8 1173 74.3
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1694.9 1171 73.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1690.6 1171 74.2
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1689.5 1179 73.7
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1171 74.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1683.3 1185 74.3
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1681.8 1173 75.0
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1679.8 1177 73.2
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1099 77.5
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1667.9 1192 74.2
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1664.0 1172 73.4
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1173 73.2
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1661.0 1149 74.8
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1659.0 1175 73.9
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1651.3 1072 78.6
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1169 72.7
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1602.4 1149 72.8
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1599.7 1182 70.5
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1590.5 1173 70.2
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1589.3 1183 70.0
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1569.7 1170 69.7
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1565.8 1170 69.4
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1557.0 947 83.5
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1538.1 1109 73.7
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1459.1 947 78.2
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1428.7 1179 66.0
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1412.9 1032 72.7
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1354.0 969 72.4
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1346.6 945 74.0
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1337.8 886 78.3
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1335.5 956 74.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1322.0 1170 62.4
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1304.7 978 72.3
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1270.4 969 70.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1227.2 810 79.4
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1200.7 814 77.0
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1184.1 813 74.8
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1133.6 806 74.4
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1119.0 1165 57.1
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.5e-308 1063.1 723 77.2
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.2e-294 1016.9 1172 49.6
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 9.7e-292 1007.3 1212 47.9
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.7e-280 969.9 540 88.5
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 8.8e-261 904.4 717 68.8
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 4.9e-251 872.1 603 75.8
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.5e-191 674.5 431 77.7
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 3.6e-169 600.1 360 81.9
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.0e-148 531.2 307 83.7
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 6.6e-147 526.2 897 41.4
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 6.8e-136 489.6 306 77.5
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 6.8e-136 489.6 306 77.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.7e-129 466.8 616 47.1
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.7e-124 451.1 285 82.5
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 3.4e-119 434.1 799 35.4
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.6e-108 398.7 1327 28.3
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 3.2e-101 374.4 228 78.5
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 4.8e-89 334.0 197 81.7
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.8e-88 332.0 510 44.1
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 6.0e-84 317.0 278 62.9
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 3.0e-83 314.7 206 77.7
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 3.7e-81 307.8 182 81.3
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.0e-79 302.0 186 76.9
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.8e-72 278.9 258 61.2
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 6.7e-67 260.4 191 72.3
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.3e-65 256.1 144 88.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 9.4e-61 240.0 186 67.7
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.6e-52 212.6 152 71.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.1e-52 212.2 130 84.6
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 2.0e-47 195.7 118 84.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.7e-46 192.6 125 77.6
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 2.5e-37 162.2 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 7.5e-26 124.0 90 71.1
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 9.8e-26 123.6 95 66.3
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 9.8e-26 123.6 95 66.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.9e-22 111.7 78 73.1
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 6.1e-20 104.4 106 53.8
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 4.0e-19 101.7 83 66.3
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.0e-18 99.4 81 60.5
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 7.5e-18 97.4 47 87.2
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.3e-17 96.7 59 78.0
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.9e-13 82.8 101 49.5
Cc04_g15210 Coffea canephora HOM05D003952 ORTHO05D154321 6.0e-07 61.2 26 96.2
Lsat_1_v5_gn_6_60101 Lactuca sativa HOM05D003952 ORTHO05D230796 5.1e-06 58.2 32 71.9


User provided reference genes

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