Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g15070 Coffea canephora HOM05D006546 ORTHO05D008362 5.7e-203 710.7 358 100.0
Nitab4.5_0006961g0030 Nicotiana tabacum HOM05D006546 ORTHO05D008362 9.3e-153 543.9 361 77.6
PGSC0003DMG400006373 Solanum tuberosum HOM05D006546 ORTHO05D008362 1.3e-149 533.5 365 75.3
Sopen04g027680 Solanum pennellii HOM05D006546 ORTHO05D008362 3.7e-149 531.9 365 75.3
Solyc04g071700.3 Solanum lycopersicum HOM05D006546 ORTHO05D008362 3.1e-148 528.9 363 75.2
Migut.C00976 Erythranthe guttata HOM05D006546 ORTHO05D008362 5.3e-148 528.1 358 76.0
SGA_v2.0_scaffold195G40788 Striga asiatica HOM05D006546 ORTHO05D008362 9.0e-148 527.3 309 84.1
CSS0026250 Camellia sinensis var. sinensis HOM05D006546 ORTHO05D008362 2.0e-147 526.2 319 82.1
Lj4A701T20 Lonicera japonica HOM05D006546 ORTHO05D008362 1.7e-146 523.1 357 76.2
Actinidia17779 Actinidia chinensis HOM05D006546 ORTHO05D008362 1.4e-145 520.0 348 76.7
MSTRG.1097 Avicennia marina HOM05D006546 ORTHO05D008362 5.5e-145 518.1 359 73.8
Nitab4.5_0001649g0020 Nicotiana tabacum HOM05D006546 ORTHO05D008362 7.1e-145 517.7 361 75.1
GSVIVG01034559001 Vitis vinifera HOM05D006546 ORTHO05D008362 1.9e-142 509.6 331 79.2
Prupe.8G036900 Prunus persica HOM05D006546 ORTHO05D008362 3.3e-142 508.8 342 76.3
Atru.chr13.2063_Atru.chr13.2062 Acer truncatum HOM05D006546 ORTHO05D008362 7.4e-142 507.7 328 78.0
SalBow7G0432 Salvia bowleyana HOM05D006546 ORTHO05D008362 7.4e-142 507.7 356 74.4
Rhsim11G0111500 Rhododendron simsii HOM05D006546 ORTHO05D008362 1.6e-141 506.5 348 73.3
vmacro01645 Vaccinium macrocarpon HOM05D006546 ORTHO05D008362 1.6e-141 506.5 307 81.4
Lsat_1_v5_gn_1_5280 Lactuca sativa HOM05D006546 ORTHO05D008362 8.2e-141 504.2 331 78.2
Cfa018304 Carpinus fangiana HOM05D006546 ORTHO05D008362 1.4e-140 503.4 369 70.7
Gorai.002G231100 Gossypium raimondii HOM05D006546 ORTHO05D008362 1.8e-140 503.1 364 72.8
AUR62040584 Chenopodium quinoa HOM05D006546 ORTHO05D008362 2.0e-139 499.6 314 79.6
MD05G1030000 Malus domestica HOM05D006546 ORTHO05D008362 2.6e-139 499.2 341 76.0
Potri.005G194800 Populus trichocarpa HOM05D006546 ORTHO05D008362 2.6e-139 499.2 328 79.6
FAN20G1322 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.7e-138 496.5 306 80.7
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.7e-138 496.5 298 82.9
FvH4_2g13270 Fragaria vesca HOM05D006546 ORTHO05D008362 2.2e-138 496.1 327 76.8
arahy.Tifrunner.gnm1.ann1.PKA9SD Arachis hypogaea HOM05D006546 ORTHO05D008362 3.8e-138 495.4 318 78.6
ECA247G1092 Erigeron canadensis HOM05D006546 ORTHO05D008362 3.8e-138 495.4 324 76.5
CANSAT25G3312 Cannabis sativa HOM05D006546 ORTHO05D008362 1.1e-137 493.8 340 75.0
Peaxi162Scf00079g02332 Petunia axillaris HOM05D006546 ORTHO05D008362 1.4e-137 493.4 360 73.9
Oeu002061.1 Olea europaea HOM05D006546 ORTHO05D008362 4.2e-137 491.9 313 80.2
HanXRQChr04g0115661 Helianthus annuus HOM05D006546 ORTHO05D008362 5.5e-137 491.5 315 78.7
TWI34G0343 Tripterygium wilfordii HOM05D006546 ORTHO05D008362 5.5e-137 491.5 331 74.9
Nn5g28792 Nelumbo nucifera HOM05D006546 ORTHO05D008362 7.2e-137 491.1 354 71.2
VMungo0464G1775 Vigna mungo HOM05D006546 ORTHO05D008362 2.1e-136 489.6 330 75.8
CiPaw.16G009700 Carya illinoinensis HOM05D006546 ORTHO05D008362 4.6e-136 488.4 312 77.9
COL.COLO4_03565 Corchorus olitorius HOM05D006546 ORTHO05D008362 4.6e-136 488.4 365 71.0
Glyma.16G164900 Glycine max HOM05D006546 ORTHO05D008362 6.1e-136 488.0 325 75.7
Hund17460 Selenicereus undatus HOM05D006546 ORTHO05D008362 6.1e-136 488.0 335 74.9
PSO541G2164 Papaver somniferum HOM05D006546 ORTHO05D008362 1.0e-135 487.3 304 80.6
Manes.18G093500 Manihot esculenta HOM05D006546 ORTHO05D008362 1.3e-135 486.9 334 75.4
PGR042G3407 Punica granatum HOM05D006546 ORTHO05D008362 1.3e-135 486.9 358 70.9
Haze_17787 Corylus avellana HOM05D006546 ORTHO05D008362 3.0e-135 485.7 370 68.9
TAR625G0865 Trochodendron aralioides HOM05D006546 ORTHO05D008362 3.0e-135 485.7 333 73.9
Ca_03250_v3 Cicer arietinum L. HOM05D006546 ORTHO05D008362 3.9e-135 485.3 317 77.9
CAN.G264.10 Capsicum annuum HOM05D006546 ORTHO05D008362 6.7e-135 484.6 279 84.2
FAN15G0764 Fragaria x ananassa HOM05D006546 ORTHO05D008362 6.7e-135 484.6 338 74.6
QL02p037672 Quercus lobata HOM05D006546 ORTHO05D008362 6.7e-135 484.6 329 76.6
Duzib093G0633 Durio zibethinus HOM05D006546 ORTHO05D008362 1.5e-134 483.4 328 75.0
Thecc.08G155700 Theobroma cacao HOM05D006546 ORTHO05D008362 1.5e-134 483.4 360 69.4
MELO3C008332.2 Cucumis melo HOM05D006546 ORTHO05D008362 1.9e-134 483.0 328 75.6
Medtr6g037530 Medicago truncatula HOM05D006546 ORTHO05D008362 5.7e-134 481.5 335 74.0
Phvul.004G092300 Phaseolus vulgaris HOM05D006546 ORTHO05D008362 5.7e-134 481.5 306 78.4
AT1G76730 Arabidopsis thaliana HOM05D006546 ORTHO05D008362 7.4e-134 481.1 324 74.4
Cpa.g.sc49.98 Carica papaya HOM05D006546 ORTHO05D008362 1.3e-133 480.3 329 74.2
Psat1g100360 Pisum sativum HOM05D006546 ORTHO05D008362 1.3e-133 480.3 312 77.9
QL02p038646 Quercus lobata HOM05D006546 ORTHO05D008362 2.2e-133 479.6 329 75.7
Lj2g0010381 Lotus japonicus HOM05D006546 ORTHO05D008362 3.7e-133 478.8 298 81.2
AL2G36880 Arabidopsis lyrata HOM05D006546 ORTHO05D008362 6.3e-133 478.0 303 77.6
CsaV3_6G005120 Cucumis sativus L. HOM05D006546 ORTHO05D008362 6.3e-133 478.0 332 74.4
Aqoxy6G00397 Aquilegia oxysepala HOM05D006546 ORTHO05D008362 1.1e-132 477.2 306 78.1
A07p28390 Brassica napus HOM05D006546 ORTHO05D008362 1.1e-132 477.2 301 78.4
BraA07t30475Z Brassica rapa HOM05D006546 ORTHO05D008362 1.4e-132 476.9 301 78.4
Aa31LG4G6800 Aethionema arabicum HOM05D006546 ORTHO05D008362 2.6e-131 472.6 325 72.9
Sp5g31870 Schrenkiella parvula HOM05D006546 ORTHO05D008362 3.4e-131 472.2 335 72.5
Sed0023841 Sechium edule HOM05D006546 ORTHO05D008362 4.5e-131 471.9 356 68.8
BcaC08g45513 Brassica carinata HOM05D006546 ORTHO05D008362 1.0e-130 470.7 325 73.8
Sabra05G0148300 Salix brachista HOM05D006546 ORTHO05D008362 1.7e-130 469.9 407 65.1
Carub.0002s2364 Capsella rubella HOM05D006546 ORTHO05D008362 2.2e-130 469.5 334 71.9
C06p31830 Brassica napus HOM05D006546 ORTHO05D008362 2.9e-130 469.2 301 77.4
BolC6t38311H Brassica oleracea HOM05D006546 ORTHO05D008362 2.9e-130 469.2 301 77.4
Thhalv10018779m.g Eutrema salsugineum HOM05D006546 ORTHO05D008362 2.9e-130 469.2 335 72.2
Sc26g0002400 Simmondsia chinensis HOM05D006546 ORTHO05D008362 5.0e-130 468.4 307 76.9
AUR62026675 Chenopodium quinoa HOM05D006546 ORTHO05D008362 1.2e-128 463.8 296 79.1
EL10Ac1g01586 Beta vulgaris HOM05D006546 ORTHO05D008362 1.6e-128 463.4 335 71.6
BcaB02g07073 Brassica carinata HOM05D006546 ORTHO05D008362 4.8e-125 451.8 282 78.7
ATR0584G152 Amborella trichopoda HOM05D006546 ORTHO05D008362 6.9e-124 448.0 301 75.1
Zm00001eb407750 Zea mays HOM05D006546 ORTHO05D008362 2.7e-120 436.0 299 73.2
ClCG08G007080 Citrullus lanatus HOM05D006546 ORTHO05D008362 2.2e-117 426.4 442 54.8
HPP92_004409 Vanilla planifolia HOM05D006546 ORTHO05D008362 7.0e-116 421.4 297 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 1.6e-115 420.2 306 70.3
Os12g0168000 Oryza sativa ssp. japonica HOM05D006546 ORTHO05D008362 2.9e-114 416.0 299 70.2
CBR_g53679 Chara braunii HOM05D006546 ORTHO05D008362 3.8e-114 415.6 305 69.5
Pp3c18_17520 Physcomitrium patens HOM05D006546 ORTHO05D008362 6.5e-114 414.8 360 61.9
Mapoly0007s0250 Marchantia polymorpha HOM05D006546 ORTHO05D008362 1.5e-110 403.7 306 67.0
MBI19_g24720_MAGBIO Magnolia biondii HOM05D006546 ORTHO05D008362 2.6e-110 402.9 494 49.8
SMO340G0128 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.7e-106 390.2 286 67.8
arahy.Tifrunner.gnm1.ann1.AD4V0Z Arachis hypogaea HOM05D006546 ORTHO05D008362 7.2e-105 384.8 419 53.2
Ciclev10001828m.g Citrus clementina HOM05D006546 ORTHO05D008362 4.0e-103 379.0 291 69.1
Eucgr.F02694 Eucalyptus grandis HOM05D006546 ORTHO05D008362 8.3e-101 371.3 210 86.7
Cre13.g587450 Chlamydomonas reinhardtii HOM05D006546 ORTHO05D008362 7.7e-99 364.8 305 62.0
FAN27G2273 Fragaria x ananassa HOM05D006546 ORTHO05D008362 4.2e-97 359.0 237 77.2
CsaV3_6G005110 Cucumis sativus L. HOM05D006546 ORTHO05D008362 1.2e-88 330.9 332 57.2
CARHR070270 Cardamine hirsuta HOM05D006546 ORTHO05D008362 4.0e-87 325.9 199 80.9
MCO03G555 Micromonas commoda HOM05D006546 ORTHO05D008362 3.4e-86 322.8 317 54.9
Dinv41054 Davidia involucrata HOM05D006546 ORTHO05D008362 4.6e-83 312.4 168 91.1
Ah.14g079510 Amaranthus hybridus HOM05D006546 ORTHO05D008362 5.6e-81 305.4 202 77.2
Gohir.A01G197500 Gossypium hirsutum HOM05D006546 ORTHO05D008362 1.1e-76 291.2 249 65.5
Gohir.D01G187700 Gossypium hirsutum HOM05D006546 ORTHO05D008362 1.1e-76 291.2 249 65.5
Ah.00g001170 Amaranthus hybridus HOM05D006546 ORTHO05D008362 5.4e-76 288.9 193 76.7
Ah.14g079490 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.2e-75 287.7 193 76.2
TPR.G39968 Trifolium pratense HOM05D006546 ORTHO05D008362 4.6e-75 285.8 166 86.1
FAN24G0701 Fragaria x ananassa HOM05D006546 ORTHO05D008362 2.3e-74 283.5 189 77.8
RcHm_v2.0_Chr6g0274681 Rosa chinensis HOM05D006546 ORTHO05D008362 9.5e-73 278.1 167 83.2
TPR.G28004 Trifolium pratense HOM05D006546 ORTHO05D008362 1.1e-71 274.6 329 50.8
SMO137G0185 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.5e-70 270.8 258 51.6
THA.LOC104810664 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 4.6e-67 259.2 148 84.5
Eucgr.K02158 Eucalyptus grandis HOM05D006546 ORTHO05D008362 1.4e-60 237.7 186 66.1
Glyma.02G080402 Glycine max HOM05D006546 ORTHO05D008362 1.2e-59 234.6 144 77.8
THA.LOC104803355 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 3.0e-58 229.9 154 74.7
SMO182G0010 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 2.8e-56 223.4 285 44.2
THA.LOC104820721 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 6.4e-53 212.2 140 75.7
Ah.04g160680 Amaranthus hybridus HOM05D006546 ORTHO05D008362 6.0e-43 179.1 108 82.4
SEGI_13550 Sequoiadendron giganteum HOM05D006546 ORTHO05D008362 4.8e-40 169.5 96 83.3
MCO02G484 Micromonas commoda HOM05D006546 ORTHO05D008362 4.3e-33 146.4 238 37.0
ECA247G1774 Erigeron canadensis HOM05D006546 ORTHO05D000004 2.4e-31 140.6 145 56.6
CDE08G0315 Ceratophyllum demersum HOM05D006546 ORTHO05D008362 1.2e-30 138.3 119 59.7
Hund17461 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.9e-23 112.5 258 32.6
SMO063G0001 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 2.2e-21 107.5 103 50.5
Medtr6g037560 Medicago truncatula HOM05D006546 ORTHO05D008362 9.1e-15 85.5 48 81.2
AagrBONN_evm.TU.Sc2ySwM_228.4528 Anthoceros agrestis HOM05D006546 ORTHO05D008362 2.1e-11 74.3 47 80.9
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.8e-07 61.2 143 33.6


User provided reference genes

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